Sequence
atgc intronic sequence ATGC exonic sequenceATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGACGAAGgtgattctttcgttcttctgtttttttttttttttttctctttggcaattcgatctgctatctgctgtgattctgctccgcgtttagctcttcctttatt...
Basic information
species | Glycine max |
transcript | GLYMA11G12610.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 1
---------------------------------------------------ATGTCTCAGCCACTCGT---GAAGAAGGACGATGACCGCGACGACGAAGgtgattctttcgttcttctgtttttttttttttttttctctttggcaattcgatctgctatctgctgtgattctgctccgcgt-ttagctcttcctttatt--
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CTCGGGCGCCCTCTCGCGCGCGCGTGCGTCGCTCCGACAGCAGCTGCAGCCATGGCGCAGCCGCTCGTCGTGAAGAAGGACGACGACCTCGACGAGGAAGgtgag-cgctcgcgcgtcagcgcctctcgtctgtcc-cgcttcgttccttcgttgcgcc-cgtgtgggcctccagttgtgtgtgcccgtgcgtgcgtgcgtgt
upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 1
------------------------------------------------------ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGACGAAGgtgattctttcgttcttctgttttttttttttttt--ttctctttggcaattcgatctgc-tatctgctgtgattctgctccgcgtttagctcttcctttatt
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GCTGTGTTTCCTTCCTTTTCTTCCCAGATCTGAATCGGTCCCTCTCATTCCACCATGGCTCAGCCTCTCGTGAAGAAGGACGACGATCGCGACGATGAAGgtgtgttcgaaaatttattttttttattttttttaaattcgattcaattgattgatccaaactttttctatcaattt-ctgtagaagaagtcggtcaagcg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120529501|gb|EH257635.1|EH257635EST: ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGACGAAG CTGAGTATTCTCCCTTTTTGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGG
genomic: ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGACGAAGgtgattcttt ... tggttaacagCTGAGTATTCTCCCTTTTTGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGACGAAGgtgattctttcgttcttctgtttttttttttttttttctctttggcaattcgatctgctatctgctgtgattctgctccgcgtttagctcttcctttatt
- - - - - - - - TGAAGA
- - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc