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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCATTAGGGTTTTCTCACATTGCTGAATGTAGCTTCGCTCTCACATTGACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcctcttctctctcacacactctctctttcatagggtttcagttttttttttctcttcgcttatgcgtctcgttttggttattgtggcag

Basic information

species Glycine max
transcript GLYMA11G12260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593977|gb|DB961921.1|DB961921
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|193418447|gb|FK384771.1|FK384771
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTACCGGGAGTGATGA
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCT-CCGGGAGTGATGA
EST: gi|213588301|gb|DB967787.1|DB967787
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|209713242|gb|BW681781.1|BW681781
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCAGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|8283332|gb|BE020893.1|BE020893
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|213590510|gb|DB968088.1|DB968088
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCAGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|213603344|gb|DB966603.1|DB966603
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|209719529|gb|BW651007.1|BW651007
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCACTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|298171644|gb|HO021236.1|HO021236
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
EST: gi|208046631|gb|GD849131.1|GD849131
EST:     GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCT                         GTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT
genomic: GACCCTTGAAACCACAATGTCCGGCCCGCTCGACCGCTTCGCTAGACCCTgtaacttcct ... attgtggcagGTTTCGAAGGATTCTCCGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATT