1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCGGAGCCACATTGGGCGTTCTGCTACACAATGCTCCACAAGGTTTCTCGAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttccttgcatttctcgctccttcctacttatgcctttgattccacgttttttcttaattgacatctcttttttttttttttttcag
species | Glycine max |
transcript | GLYMA11G11960.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|209705156|gb|BW667788.1|BW667788
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGATEST: gi|10709996|gb|BF009720.1|BF009720
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGAT
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGGTGEST: gi|209722769|gb|BW682867.1|BW682867
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|8826251|gb|BE209981.1|BE209981
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|27446333|gb|CA953456.1|CA953456
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|20813646|gb|BQ298124.1|BQ298124
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|209725283|gb|BW672760.1|BW672760
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|193499460|gb|FK461255.1|FK461255
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|213595316|gb|DB968448.1|DB968448
genomic: GTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGEST: gi|209714966|gb|BW650812.1|BW650812
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGAGCCACATTGGGCGTTCTGCTACACAATGCTCCACAAGGTTTCTCGAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttccttgcatttctcgctccttcctacttatgcctttgattccacgttttttcttaattgacatctcttttttttttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT