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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatttaatgttcgatacgtaat...

Basic information

species Glycine max
transcript GLYMA11G11760.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 5'ss of exon 1
CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatg-atctcttttgaatttcactttattaggataatttaatgttcgatacgtaat
  |   |     |   ||  |||   | |   ||||||||||||||||||||| || || ||||||||||| || |||||  | |||||| ||||||| ||||||     || |   |  ||   |    |    |  | | ||   || |      |  | |||  |      | |      |  | |||  | |   | 
GGAGAAGGAAGAGGAGCAAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCATCTTCTCATgtaatctccgccatccctcttcctcttcccccgatcaagcgattaggtgtagaaagctccagtttttccaatcaaagtcgccatctttttctttccccca-

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 1
CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttat-taggataatttaatgttcgatacgtaat
| |      |      |  ||       |  | ||||||||||||||||| || || || ||||||||||| || |||||  | |||||||| |||||||||||       || ||| |  |  ||   | |   |||| |       |||||  | |||  |    || |   | ||    |  | |             
CGACGGCGAGCGACCACCATGTCCTCCTCCACCTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaa----gctcccaatcttccccttcacttt---ctcggggcca---gatctgatctgagatgaggttgacacacgacgcatgcaag-------------

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 5'ss of exon 1
CCATCCGACGTCGTTT-CAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgta-attcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaa--tttcactttattaggataat-ttaatgttcgatacgtaat
  |   || | ||    |   |||   | |   ||||||||||||||||||||| || || ||||||||||| || ||||| || |||||||||||||| |||   |||     | |   ||    ||       ||||||    | |     |    |  ||  | |   ||| |  ||||||  ||    ||    ||     
-AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccccttcgaccatcctccttttccacttgctcgctcatgcgattccgtactcaaagctctagttttttccggataaagtttggatttttcacc----

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 5'ss of exon 1
CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatttaatgttcgatacgtaat--
     |  |         | |||   | |  ||||||||||||||||||| || || || |||||||||||||| ||| | ||||| ||||||||||| ||||  |    | |    |  ||     |   ||| ||   | || |||  | |||||   | ||    |     | | |  ||   |       |||  |  
AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgccgcctcctcgtcctcacgtgttatactttcggttgcattgtttctttccgaatttgagtgg--ggaaaaggttggagccgatcccgtccttt

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
CCATC-CGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatt-taatgttcgatacgtaat
||| | | || ||    || ||       |  | ||||||||||| |||||||| || || ||||||||||| || ||||| || || |||||||||||||||||        |  || || |         | |     | |||       |   |   |   ||  ||  | |     ||      |   | | | ||  
CCACCTCCACCTCCACCCA-TGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag-

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 1
CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattc---aatcccta-atttctcaattagatctatgctcgtgttttcatgatctc----ttttgaatttcactttattaggata-atttaatgttcgatacgtaat
                     ||   | |   ||||||||||||||||||||| || || ||||| ||||| || ||||| || |||||||||||||| |||   ||     |||| | | | |||    |     | ||||| |   |   |  | |     | |   |||   |||    | ||| |  |  ||||           
---------------------ATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGTTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgtcccgcttccccatactcctcttccactcgcacgctcgagcgattccgtacccgaagctctagtttttttttttcccgaatagagcttctgtttc---------

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 5'ss of exon 1
-CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttat-taggataatttaatgttcgatacgtaat-
  | |   |  ||     |   | |||| || | |||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||  |||| |||||||| ||| ||| | |   |  ||  | | ||   ||   |||  | ||| ||  |   |  | |   | |     ||      ||| 
GTCGTTTCAGATC-CACTATCTAAAATGTCTACATTCAGCGGCGATGAAACGGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgta-ctcaaaccctaatt-ctctattcgcttcgttttcacgctatctccattcttttccatttttacgctgcgtttggttcctgagaaaccgcatgaaaata

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 5'ss of exon 1
---CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatt--tctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatttaatgttcgatacgtaat--
     | ||| || | | ||   ||     |||  ||||| ||| ||||||   || || || ||||||||| ||||||| |||||||| ||||||||||| ||||  |  |  |  | |   |||| |   |||||   |  |   |     | |   | |||  | || ||| |||  |    |||  || | |||   |     
ATCGAAGCCGGCGCCATGTC---GACCTCTGCTGTGTTCAACGGAGATGAGGTCGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgta--tggactctcactcactctcgacc-gatctggcccagaagtggttcgtttgttcttgggtgtcgcttcattttgg-ggtttggtgatggatcgttggacc

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 5'ss of exon 1
---CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataattt----aatgttcgatacgtaat---
   | ||||| || | | ||   ||    |||   |||||  || ||||||   || || || ||||||||| | |||||||||||||||||||||||||| ||||   ||||  |      |   ||    | ||   ||| || |   || |      ||  ||||    ||||||    ||||    || |   | |||||  |   
ATTCGATCCGGCGCCATGTC---GACCTCGGCGGTGTTCAATGGGGATGAGGTCGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgta-cgcaatgtccg--cccctgatgtagtttagaatcgggtctatttggtg----atgggtttcgtggtattagatggatttttggaaggagtgctacgtccttga

upper sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 5'ss of exon 1
---CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgta---attcaatccctaatttctcaattagatctatgctcgtgttttcatg-atctcttttgaatttcactttattaggataatttaatgttcg-atacgtaat
   |     |||  | | ||    |     |||  ||||| ||| ||||||   || || ||||| |||||| ||||||| |||||||||||||| ||||| ||||   |||  || | | | ||     ||     |  |    |  ||| |||    | || ||||  |       |  |  |    | ||||  | | | ||   
AACCTGCTAGACACCATGTCC---ACTGCTGCTGTGTTCAACGGGGATGAGGTCGCCCCCTTTTTTGGCTTCATTGGAGCTGCAGCTGCCCTCGTTTTCTCATgtatgcattggattcgttactt--tggttgcgattgggaggattatttgatgtgggtattgtgaacatt-tggggtcggacttgagtcatgtggggagatgtg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322786|gb|FK014477.1|FK014477
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGTGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|15814329|gb|BI786604.1|BI786604
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACATTTTAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|16105693|gb|BI893433.1|BI893433
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|298185005|gb|HO030218.1|HO030218
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|17964296|gb|BM271033.1|BM271033
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|7591482|gb|AW707214.1|AW707214
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|9204452|gb|BE330676.1|BE330676
EST:     GGCACCGTGTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCTA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|21888289|gb|BQ741502.1|BQ741502
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|192301750|gb|FG997650.1|FG997650
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTACGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|20207727|gb|BQ133816.1|BQ133816
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|19453045|gb|BM954455.1|BM954455
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|19346066|gb|BM890946.1|BM890946
EST:     CACCGTTTTTCGGCTTCCTTGGAGACAG-AGATGCACAC-TACTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGTGTGGCGTTGGCGTGGCTTCG
genomic: CACCGTTTTTCGGCTTCCTTGGAG-CCGCAGCTGCCCTCGT-CTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCG
EST: gi|15814584|gb|BI786859.1|BI786859
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGTTGTCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|9258083|gb|BE346230.1|BE346230
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|298190169|gb|HO032290.1|HO032290
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGCCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|16348867|gb|BI974462.1|BI974462
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|20449545|gb|BQ253669.1|BQ253669
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|12689888|gb|BG156224.1|BG156224
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|7692739|gb|AW760839.1|AW760839
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|58020539|gb|CX707281.1|CX707281
EST:     GAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|298178408|gb|HO024143.1|HO024143
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|9898802|gb|BE607770.1|BE607770
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCTAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|254319437|gb|GR830688.1|GR830688
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|213592723|gb|DB955839.1|DB955839
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|192306353|gb|FG995119.1|FG995119
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|19452920|gb|BM954330.1|BM954330
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|10235770|gb|BE804658.1|BE804658
EST:     GCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCCA
genomic: GCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|9819477|gb|BE554990.1|BE554990
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|298189798|gb|HO038201.1|HO038201
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
EST: gi|298193334|gb|HO033768.1|HO033768
EST:     GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA
genomic: GGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaat ... atggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATCCGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatttaatgttcgatacgtaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC