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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCCACGATTCCTCCTTCTCTTCCTTGTTCTCTCAATTTTCCTCATTTTCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctttaacctttcatttgtatgttgttgtcattgtggatctgattttggtaattgggccggttttcgtaccataattgtttatattactgtgag...

Basic information

species Glycine max
transcript GLYMA11G11370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409712|gb|EV279520.1|EV279520
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGGGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|192301026|gb|FG987981.1|FG987981
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|163921467|gb|EH038979.1|EH038979
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|120533708|gb|EH261841.1|EH261841
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|213597314|gb|DB964387.1|DB964387
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|151406317|gb|EV276132.1|EV276132
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|298170662|gb|HO019286.1|HO019286
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|192306070|gb|FG993660.1|FG993660
EST:     TCACATTTTCTGGTACTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
EST: gi|19053954|gb|BM732621.1|BM732621
EST:     TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAG                         GTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC
genomic: TCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctt ... tctgatgtagGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCAGAAATTACACAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCCACGATTCCTCCTTCTCTTCCTTGTTCTCTCAATTTTCCTCATTTTCACATTTTCTGGTTCTACCACCACCAATGGTTTTACTAATCCCAAACAGgtgcgccctttaacctttcatttgtatgttgttgtcattgtggatctgattttggtaattgggccggttttcgtaccataattgtttatattactgtgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggccgg