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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCAGCTGCCTACAGCCGCTACAACTAAAAAAGCCCTTTGCTTTCTCTTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGgtaacccccaccttccttttctcgcttttatgtcctctacttgttcaattattgcactttcctgccaaaatgtttgtggggggttttagtgggaaatgta...

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039953|gb|BM308247.1|BM308247
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|298166168|gb|HO009139.1|HO009139
EST:     ACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: ACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|7796132|gb|AW781529.1|AW781529
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|192307619|gb|FG999658.1|FG999658
EST:     GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|209721947|gb|BW680082.1|BW680082
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|7041859|gb|AW471753.1|AW471753
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|298168738|gb|HO009668.1|HO009668
EST:     ACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: ACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|192306220|gb|FG995056.1|FG995056
EST:     GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga