Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt...
Basic information
species | Glycine max |
transcript | GLYMA11G10130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 1
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgtta-attcctttctgctatgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt-
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TGGTTGATGCTATGGCCGTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGATTTGCCCACTGGgtaatgatttctttccccagtagggatttctgtttttttttattcttcttagattagtgaa--cattgattgagtaatgtgtgaaagatgagtcctttattt
upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 1
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt-
||||||| |||||||| || ||||||||||| || |||||||| || |||||||| |||||||||||||| | || |||||| |||| || || |||||||| | ||| || ||||| | | | || || ||| | | || | | || | | | | || |
TGGTGGACGCTATGGCTGTGGAGATGCACGCGGGTTTGGCATCTGAGGGTGGTTCCAAGCTCAAAATGCTCCTCACCTTTGTTGATAAGCTTCCGAATGGgtatttccttctgaaacttttggtgcttctggttggtggctttatgttttttttggtt-tgttcctttccgggtccgtctcagtatcttcttgcgtgctcg
upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S414_10V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgct-atgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt-
|||||||||||||||| | ||||||||||||||| | | || ||||| ||| | |||||||||||| || | || || | || | |||||| | || | || ||| || || | ||| |||| |||| | || | | || | | || ||| | |
TGGTGGATGCTATGGCGGCTGAGATGCACGCTGGTCTTGTTTCGGAAGGCGGTAGCACTCTCAAAATGCTTCCTACCTACATTGATCGCTTGCCAGACGGgtaacttg--ctttaaatttcttctgttaggcagactctttggcttcatttatttgtttatcaattcttttttagactttgaattttcactcctcttccgtt
upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S12_19V6.4 (Physcomitrella patens), 5'ss of exon 1
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattc-atttaatcatactcttaatcttgt-tttctttgtt-gccacggggaatgatt---
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TGGTGGATGCTATGGCGGTCGAGATGCACGCTGGTCTTGTTTCGGAAGGTGGAAGCAAACTTAAGATGCTTCCCACCTACATTGATCGCTTGCCTGACGGgtaaa------ttttcgataattgcttcaaagagcccacctcatctattttacttttttgtgtctttttctttgaactcctctgtttgacttgtacaccaatgcag
upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattcattt--aatcatact-cttaatcttgttttctttgttgccacggggaatgatt
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TTGTGGATGCTATGGCCGTCGAGATGCACGCTGGCCTCGTGTCGGAAGGCGGAAGCAAGCTTAAGATGCTGCCCACCTTCATTGATCGCTTGCCGAATGGgtaacttgctcgtgctgtgcttgtgtttttattgttgtaaaacttcttccatttctggctccattactaaattatagcttcttctcttcttcacgttttg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208197961|gb|GD998076.1|GD998076EST: GGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGG GACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAG
genomic: GGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaat ... ctttgatcagGACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGGATGCTATGGCCGTTGAGATGCACGCTGGGTTGGCATCAGAAGGTGGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaatctcttcgttaattcctttctgctatgcttcattgccattcatttaatcatactcttaatcttgttttctttgttgccacggggaatgatt
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