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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTATAATTTTGACCTTTGGTAACTATGCGTTTATGGACTTTATTCTGACTTGGGTTGAACAGTTGAATGATCTGGGAGTTTCTAATTATCTTGTTGgtgagtctcacgatttaagccttctatttttctctatcatgtgcttttgttgagttttgtaattgccattgttagagatgcgtatctggtagtgtacagttgactaaaaagggttctgaaaatctaccttttag

Basic information

species Glycine max
transcript GLYMA11G09650.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
AATATTATAATTTTGACCTTTGGTAACTATGCGTTTATGGACTTTATTCTGACTTGGGTTGAACAGTTGAATGATCTGGGAGTTTCTAATTATCTTGTTGgtgagtc-tcacgatttaagcct---tctatttttctctatcatgtgcttttgttgagttttgtaattgccattgttagagatgcgtatctggtagtgtacagttgactaaaaagggttctgaaaatctaccttttag
||| |||| ||  |||||||||| |||||||| |||||||| || ||| ||||||||||| |||| |||| |||| | |   | || |||  ||||||||||||||  ||||   | |   ||   |||  || ||  | |||   |||||   | ||||  |||| |     |  | | | |   ||                                                  
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagtta-gtaactttatgttatggggctttatag-------------------------------------------------