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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATTTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCTTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcgtcttttccttttattcattttcattttcattcgttgcatttctcgctcaaacgcttgatctgcttctgtttacctcgtatcatgggtttg...

Basic information

species Glycine max
transcript GLYMA11G08540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08540.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G17730.2 (Arabidopsis thaliana), 5'ss of exon 1
GTGAATTTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCTTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgatt-cgtcttttc---cttttattcattttcattttcattc---gttgcatttctcgctcaaacgcttgatctgcttctgtt----tacctcgtatcatgggtttg--------------------------------------------------------------
| ||||||||||||  |  ||||| |   | ||    ||    | ||||| ||  | || | |||  ||||||||||||||||||||| ||||||| |||||||| || ||| | ||    || || || |  ||   | |  |||       |  || | | || ||   ||| ||  ||||  ||    |   | | ||||| |  |||                                                              
GGGAATTTCGTCGAACGCATTAAAGACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCTTCTTCTTCGCACTAGgtttgttttcgtttcttgtaactcttcttgagattgtctgtagttctaaaactcgattttggatctaattgttgctcatcttcgattggattgagttggatcattgaattgatttgattattagaaagtttgtaacttggagctaagaaagctgattcctttttcatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309482|gb|FK000956.1|FK000956
EST:     AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG                         TTGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: gi|209720570|gb|BW677305.1|BW677305
EST:     AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG                         TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: gi|298186796|gb|HO037429.1|HO037429
EST:     AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG                         TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: gi|298187780|gb|HO031737.1|HO031737
EST:     AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG                         TTGGCACTTTGTTGGGGGCTTTGACTGGA
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGA
EST: gi|298184657|gb|HO029870.1|HO029870
EST:     AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG                         TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG