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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAGAATGATGTTGGACGGAACCGAAGACGAAGAGAAGTTTCTCGCCGCCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctcctccgttaaaccctaacctctctcttccttctattccacgcatccacgatcacactaatttttcagattcgccttccaaattcctaattgattcggatccaatttcgattcgtcgcag

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 1
ACAGAGAATGATGTTGGACGGAACCGAAGACGAAGAGAAGTTTCTCGCCGCCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctcctccgttaaaccctaacctctctcttccttctattccacgca-------tccacgatcacactaatttttcagattcgccttcc----aaattc---ctaattgattcggatccaatttcgatt-cgtcgcag
  |||||| |||| | ||  || | |||||||||||||| |  || |||||||| |||||||||||||| |||||  |||| |||||||| || ||  ||||||| |   |||| |     ||||   |   | |  |      |  | | |        |||   ||   |   |||| |   ||  |||| |    |||  |   ||||||  |||   |    |||   || | || |||
GGAGAGAAGGATGGTAGAAAGAGCTGAAGACGAAGAGAAATGGCTGGCCGCCGGGATCGCCGGCCTTCAACAGAACGCCTTTTACATGCATCGCGCTCTGgtaacacgctctccttctctacctatgtttggtttgacggaagatagaggaaaatgttccccagattcgttccttttttccttttttccctttctgagaaacgcagcctaattttttcccttttttttttttttacttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193594995|gb|FK546812.1|FK546812
EST:     CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTG                         GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
genomic: CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctc ... ttcgtcgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
EST: gi|254342605|gb|GR858767.1|GR858767
EST:     CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTG                         GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
genomic: CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctc ... ttcgtcgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
EST: gi|15285344|gb|BI469235.1|BI469235
EST:     CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTG                         GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
genomic: CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctc ... ttcgtcgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
EST: gi|208286415|gb|GE084317.1|GE084317
EST:     CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTG                         GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGAT
genomic: CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctc ... ttcgtcgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGAT
EST: gi|120531471|gb|EH259604.1|EH259604
EST:     CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTG                         GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC
genomic: CCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGgtaactcctc ... ttcgtcgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCC