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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCGCTCTTCCCACCATCGTCGAAGTCGATTTGGGTAGCCGGAGCTATCCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataatattaatagttccttcatcaattcaatttactgtaattatttccaatatgtctgtatgtggatttatacttactcaattcatagtgcaat...

Basic information

species Glycine max
transcript GLYMA11G08350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256948|gb|BQ453836.1|BQ453836
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|13311950|gb|BG405601.1|BG405601
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|24205560|gb|BU964813.1|BU964813
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|6069853|gb|AW099453.1|AW099453
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|15815573|gb|BI787848.1|BI787848
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|19348467|gb|BM892999.1|BM892999
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|17518987|gb|BM188029.1|BM188029
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|213594369|gb|DB967981.1|DB967981
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|192306954|gb|FG999973.1|FG999973
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|9258030|gb|BE346153.1|BE346153
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|213600921|gb|DB968843.1|DB968843
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
EST: gi|209711274|gb|BW665326.1|BW665326
EST:     CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC
genomic: CCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgtgcttataa ... attggaatagGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCC