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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTTTCGGAGAAGAATTAAGCACTCGGTTGCAGAACAGAACAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccagatttcccctcgtgcgttgatttcagacagccccataccaatttctagggtttttattgatgttgcggtaacatatgtttgattgtattgctttcttcaacag

Basic information

species Glycine max
transcript GLYMA11G08290.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193722335|gb|FK656283.1|FK656283
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|151409810|gb|EV279618.1|EV279618
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193548323|gb|FK505316.1|FK505316
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAAC--GGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|208055142|gb|GD852375.1|GD852375
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193666070|gb|FK610519.1|FK610519
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAAC--GGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|14258768|gb|BG881676.1|BG881676
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|213600544|gb|DB960092.1|DB960092
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|208173744|gb|GD967201.1|GD967201
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|213605510|gb|DB970667.1|DB970667
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|298183378|gb|HO028591.1|HO028591
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|298165035|gb|HO011084.1|HO011084
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193486749|gb|FK448384.1|FK448384
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCCTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|213596699|gb|DB964046.1|DB964046
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|207712448|gb|GD693842.1|GD693842
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|4283205|gb|AI440627.1|AI440627
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|208113075|gb|GD912450.1|GD912450
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|208054615|gb|GD850258.1|GD850258
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193724280|gb|FK657540.1|FK657540
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAAC--GGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|207745371|gb|GD716327.1|GD716327
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193302970|gb|FK266620.1|FK266620
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|298162986|gb|HO011719.1|HO011719
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|209715414|gb|BW684698.1|BW684698
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|193545854|gb|FK501309.1|FK501309
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAAC--GGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|207813620|gb|GD783287.1|GD783287
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
EST: gi|151397896|gb|EV267769.1|EV267769
EST:     CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAG                         GCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC
genomic: CAAACTTCTTTCACTCTTTCGCTTCTGAATCTTCAACAATGGTGCTCGAGgtaatcccag ... tcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTAC