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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta...

Basic information

species Glycine max
transcript GLYMA11G07980.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 5'ss of exon 1
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta--------
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||| || |||||||| ||||| || ||||| ||||| || ||||  || |  ||     | |  |  |     |     |  | | | |   |    |  |||| | ||   | |||| ||  ||  |  |  ||| |  |         
TCTTCGACGGCTACGCGCACCTCTCCTCCGGCCTCGCGTGCGGCCTCGCCGGCCTCGCCGCCGGGATGGCCATCGGCATCGTCGGCGACGCCGGCGTCAGgttatccccatc----ccgaaatcccccccacccaaaatgtgttaaactttt---tttgatgtggatttgt-taataatactccggaatgaggtaaaattgctgaact

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta--
|||||||||| ||||| |||||||||||||| ||||| ||||||||||| || ||| |||| ||||||||||| ||||| || ||||| ||||| || |||||  ||| |||   |||   |  ||  |  | | |    ||  ||    |  || |||       |  |||| ||||   | |    |   |||||     
TCTTCGACGGTTACGCCCACCTCTCCTCCGGTCTCGCCTGCGGCCTCGCCGGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccctctcattcccctcctcagtcccatcta--ctactactaattacaacaagggagtagttattattattaagctttcaattgctgttagcctgc

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta---
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| | || ||||||||||| ||||| || || || ||||| |||||||| | | |  |  |   |    ||    | |||| ||| | |  |||| |  | | |    |    |   | || | |   |  || || |   | | |   
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtc-catgct-aattgattctcagggaaaaaaaactgtcgccaggctta-gaccaagcaatt

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgta---ttctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta
| || || |||||||||||||| || ||||| || || || ||||| ||||| ||  | |||||||||||||| ||||||||||| ||||| || || |||||    || | |||  ||| || |   | |  | | |||||| ||  | |  ||  |  |  | |   |   |   ||        ||   ||  ||  |  
TTTTTGATGGCTACGCTCACCTTTCGTCCGGGCTTGCCTGTGGCCTTGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTTGGTGATGCTGGAGTCAGgtaaagctccctctctctttgtagtggacatcatatatttact-atgtccttttcctactatctactattcaatgccatggccagaatgttgata-ttgtgc-

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G028432_T01 (Zea mays), 5'ss of exon 1
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgt----attctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgta-tagttataattattttcttgcgtatggttaggta
|||| |||||||| || ||||| || |||||||| || || || || ||||| ||  | || ||||||||||||||||| ||||| ||||| ||||| ||||    |  ||  ||| | |  |||| | || | |  |||   ||     || ||    |       | |  ||   ||||      |     ||    |     
TCTTTGACGGCTATGCCCACCTGTCGTCCGGCCTTGCCTGTGGTCTTGCTGGGCTTGCTGCAGGCATGGCCATTGGCATCGTTGGTGATGCTGGTGTCAGgtaaagacgcttcctcttatcatattctgctatatgctttggtttggctgataatatgctggtcaatgcagcagcagtaatggcaggcacttctaaaact-----

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgta-ttctc-actcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta-
| ||||| ||||| ||||| ||||| ||||| || ||||| || |||||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||||| ||||| | | | ||||| | | |  | |      || ||  ||  || ||||||| | ||   |   ||  |   | | ||||  |  ||||| | |  
TATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGgtaattctcgattaaatttctctatatgatgtataacctaatt-caat-tggtcgaatacgttggaaactttt-cagaaaatatcttaggcttggtttgattc

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta-
| ||||| ||||| ||||| ||||| || || || ||||| || || ||||| ||||| ||||| ||||| ||||| || || || ||||| ||||||||||| |  |  || | | |||  |    ||  || |||  ||  | ||   | ||   |  | |   |  ||| || | | |      |  | |||   |  
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatc-tctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataa-gatgcgtatagttataattattttcttgcgtatggttaggta------------------------------------------------------------------------
| ||||||||||| |||||||| || || ||  |  | ||||| || ||||| || |||||||||||||||||||| |||||||| ||||| || || ||||| |    |    | |       ||| |      |   | | |    | | ||||   ||  | | |   | |  ||   |||      |  | |   |                                                                         
TGTTCGACGGCTATGCTCACCTTTCATCTGGTTTGTCGTGCGGTCTAGCTGGTCTGTCCGCTGGCATGGCCATTGGTATTGTTGGAGATGCTGGGGTCAGgtaataattcaagatctgagcacatctataagaaatgtgtaacacataggttgaatggtgaatcttgtctcttttcttcgattcaaattcagagctgacttttggatcataacctaccattggtaaatacatgcacgggggtttgaccggagggtttatttttttgtgcgcag

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37480 (Selaginella moellendorffii), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta-
||||||| |||||||| || ||||| |||||  | |||||||| || ||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||    |  |  |  |  |  ||   |||     ||    ||   || | | | | | | | ||  |   |        | ||  || |  | | |  || 
TCTTCGATGGCTACGCGCATCTCTCTTCCGGATTGGCTTGCGGGCTTGCTGGCCTCTCGGCTGGGATGGCGATTGGAATTGTTGGAGACGCTGGAGTGAGgtcaagtttccaaactctttcttcgttttgctgcttcgaatagttcacgcttgtagacggt-cgagtgtctgctgactatctccagctttagctcaactaa

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta
| ||||| ||||||||||| || || ||||| || |||||||||||||| || ||||| ||||| ||||| || || ||||| || || || || ||  ||||   ||  ||  |    |    ||||||||||       ||| |   || || |    ||  | |  ||  |                          
TGTTCGATGGCTACGCTCATCTATCGTCCGGGCTGGCTTGCGGCCTCGCGGGTCTCTCGGCTGGAATGGCAATCGGGATTGTCGGTGACGCTGGAGTCCGgtaagttcgatcgatcaaaagccatctttttcttcg-----atatctccattgattggtttgtttttctttgcag-------------------------

upper sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta
| ||||| ||||||||||| || || ||||| || |||||||||||||| || ||||| ||||| ||||| || || ||||| || || || || ||  ||||   ||  ||  |    |    ||||||||||       ||| |   || || |    ||  | |  ||  |                          
TGTTCGATGGCTACGCTCATCTATCGTCCGGGCTGGCTTGCGGCCTCGCGGGTCTCTCGGCTGGAATGGCAATCGGGATTGTCGGTGACGCTGGAGTCCGgtaagttcgatcgatcaaaaaccatctttttcttcg-----atatctccattgattggtttgtttttctttgcag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458787|gb|CD400815.1|CD400815
EST:     CATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: CATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|209716901|gb|BW679614.1|BW679614
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|18734229|gb|BM528063.1|BM528063
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|12688726|gb|BG155062.1|BG155062
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTNTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31475096|gb|CD417124.1|CD417124
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|193487544|gb|FK451363.1|FK451363
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|14259228|gb|BG882136.1|BG882136
EST:     GCCTCTCCGCTGGCATGGCCATTGGCATTNGT-GGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTNTGTTGGGATGATTCTCATTCTCAT
genomic: GCCTCTCCGCTGGCATGGCCATTGGCATT-GTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|22525095|gb|BU083906.1|BU083906
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208309475|gb|GE108923.1|GE108923
EST:     ATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: ATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|33390235|gb|CA853442.1|CA853442
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|13562522|gb|BG550742.1|BG550742
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31471504|gb|CD413532.1|CD413532
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|213589281|gb|DB963769.1|DB963769
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|11413729|gb|BF425740.1|BF425740
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTATGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208097699|gb|GD891362.1|GD891362
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31456190|gb|CD398218.1|CD398218
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|209716902|gb|BW679615.1|BW679615
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31473974|gb|CD416002.1|CD416002
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31310808|gb|CD396011.1|CD396011
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208160340|gb|GD957460.1|GD957460
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|58022005|gb|CX708746.1|CX708746
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|26058676|gb|CA801590.1|CA801590
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|10710507|gb|BF010225.1|BF010225
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|209724383|gb|BW662942.1|BW662942
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208056736|gb|GD853827.1|GD853827
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|213600600|gb|DB960148.1|DB960148
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|9902680|gb|BE611578.1|BE611578
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTGAG                         AGCAAATGCCCAACAGCCAGAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|193425754|gb|FK387381.1|FK387381
EST:     CTCTCCGCTTGGTCTATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: CTCTCCGC-TGG-C-ATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31467943|gb|CD409971.1|CD409971
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|14999244|gb|BI320276.1|BI320276
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298190561|gb|HO032682.1|HO032682
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|4314062|gb|AI461181.1|AI461181
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31474645|gb|CD416673.1|CD416673
EST:     GCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|13789992|gb|BG652583.1|BG652583
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaga