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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattattataattatccatactcaattccctttttttcttagattctcttactatttccaatattcgtcgcttctcgggtttcaaattgagaggataa...

Basic information

species Glycine max
transcript GLYMA11G07910.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 1
ACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattattataattatccatact-caattcc--ctttttttc-ttagattctcttact--atttccaatattcgtcgcttctcgggtttcaaattgagaggataa
  | || |||||||||||||||| || |  || ||||| ||||||||||||| |||  ||||||||||||||||  |||| || ||||| |||||  |||||||||   ||  |     |||    |||| |  ||  ||||| |||| ||||   | |  |     | |||      |    ||  | ||  |||  ||      
CTTGTGATGCAGAGACCTAGACGACGTTTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGATCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGgtaattgcgattctctcaaatatcataatttctgctacttttcgttagtttctagaattcgagaaggagtatcatctacgctgcgtctatcggatttgga------

upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 1
ACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattattataat---tatccatactcaattccctttttttc--ttagattctcttactatttccaatattcgtcgcttctcgggtttcaaattgagaggataa
|  ||||||||||||||||||||  | ||||||||||| |||||||| ||||||||||| |||||    ||||| || ||||| || || |||||||| |||||||  |        | |   | | |||||   ||  |     ||  |||   | |  |||||| |||   |      |  |||  || | ||  | |     
AGCATGTTGCAGAGACCTAGACGAAGGTGCGAGGGCACGGCCATGGGTGCCATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattccttccccctcttttttttcccaatttttttgctcatgattcaattaaataataatttccgataca-gcaatcgcaagggagtcgagttatgtga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410135|gb|FK372958.1|FK372958
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|193415174|gb|FK380092.1|FK380092
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|27426508|gb|CA938028.1|CA938028
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATATTTTAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT