1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTTTTTCTTTGACAATTGAGAATTGTTCCTCTCTTCTCTTCCATTCGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagccctaactctcaaaatctcttcgattctctctttccgcgtgttcattcgtttcttaggttgaattttgggattttatttgatgatgatgatgatgtatgtttcag
species | Glycine max |
transcript | GLYMA11G07810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGEST: gi|10237961|gb|BE806849.1|BE806849
genomic: AGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGEST: gi|254317299|gb|GR826244.1|GR826244
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGEST: gi|151393796|gb|EV263671.1|EV263671
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTTTTCTTTGACAATTGAGAATTGTTCCTCTCTTCTCTTCCATTCGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagccctaactctcaaaatctcttcgattctctctttccgcgtgttcattcgtttcttaggttgaattttgggattttatttgatgatgatgatgatgtatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC