Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGGAGACAGCAGCCGAATTGCACACCCGAGTCATGAGGAAGCGGGATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccaccctttactcttcctctcttctccaactctcactcacagtaaaaccctaatagatgcaatctcgcacgatccaattttacttttattgcttaatttgattgctttttag

Basic information

species Glycine max
transcript GLYMA11G07720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07720.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 1
--GGAAGAGGAGACAGCAGCCGAATTGCACACCCGAGTCATGAGGAAGCGGGATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgt-accccaccctttactcttcctctcttctccaactctcactcacagtaaaaccctaatagatgcaatctcgcacgatccaattttacttttattgcttaatttgattgctttttag
   |     || ||| | ||        |   |  ||  |||||||| || |||||||| ||| | |||||||| |  || ||||| ||||||||||||||||| |    || |  || || || |||  |       ||| | |  || | |||   ||   ||    |||| | |  ||  |    |   | | || ||| |   ||  ||||     
TCTGCCATTGATACATCTGCTTGCGGTTAGGGCAAAG--ATGAGGAAACGCGATTTGGCTATTTTGATGCTCTCTGGATTTGCTATATTCTTCACTCTTCAGgtgattttacacactaatcgtcttcttattctt---tcttagtt-caatcaaattgtagctgaa--catctagaatcattga----tcgatctgttacttga---gaaagctt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618475|gb|DB967712.1|DB967712
EST:     ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
EST: gi|298185143|gb|HO030356.1|HO030356
EST:     ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
EST: gi|209705770|gb|BW661438.1|BW661438
EST:     ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA