Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGAACCGAGTGCTATATGCATTACCCGTTTTATTCTTCACTTGTTTCGCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctttaaccttttccaccccaataagccaaaaagctttaccatgctactatttttttctgctttccttttcatgattcgttttttcattctctg...

Basic information

species Glycine max
transcript GLYMA11G07530.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390382|gb|CA853577.1|CA853577
EST:     CTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: CTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|12689521|gb|BG155857.1|BG155857
EST:     TCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: TCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|10235681|gb|BE804569.1|BE804569
EST:     ACCTCTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: ACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|192316515|gb|FK009312.1|FK009312
EST:     GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|15661703|gb|BI699074.1|BI699074
EST:     CTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: CTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|19452855|gb|BM954265.1|BM954265
EST:     AGTCACCACCTCTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|192333273|gb|FK026154.1|FK026154
EST:     GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|15814337|gb|BI786612.1|BI786612
EST:     ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|6481455|gb|AW200726.1|AW200726
EST:     CACCAGTCACCACCTGGGAACTCTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: CACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: gi|15203687|gb|BI426455.1|BI426455
EST:     CTCTCTCTCATCT                         ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: CTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA