1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCTGAACCGAGTGCTATATGCATTACCCGTTTTATTCTTCACTTGTTTCGCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctttaaccttttccaccccaataagccaaaaagctttaccatgctactatttttttctgctttccttttcatgattcgttttttcattctctg...
species | Glycine max |
transcript | GLYMA11G07530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|10235681|gb|BE804569.1|BE804569
genomic: CTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|151395789|gb|EV265666.1|EV265666
genomic: ACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|58014268|gb|CX701010.1|CX701010
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CACCTCTGAACTCTCTCTCTCATCT ATAAGTCACCATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192310085|gb|FK000649.1|FK000649
genomic: CACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192316515|gb|FK009312.1|FK009312
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192331258|gb|FK023769.1|FK023769
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: AGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192321263|gb|FK014353.1|FK014353
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|58017496|gb|CX704238.1|CX704238
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|151402592|gb|EV272405.1|EV272405
genomic: CACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15661703|gb|BI699074.1|BI699074
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|7686402|gb|AW757050.1|AW757050
genomic: CTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: TGAACTCTCTGGGTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|209729103|gb|BW655080.1|BW655080
genomic: TGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: AGTCGCCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192333273|gb|FK026154.1|FK026154
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15203687|gb|BI426455.1|BI426455
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|21595665|gb|BQ610566.1|BQ610566
genomic: CTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: TCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|213596795|gb|DB964086.1|DB964086
genomic: TCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|19452855|gb|BM954265.1|BM954265
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: AGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|58017619|gb|CX704361.1|CX704361
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CACCTCTGACCTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|12689521|gb|BG155857.1|BG155857
genomic: CACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: TCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|151406239|gb|EV276054.1|EV276054
genomic: TCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15814337|gb|BI786612.1|BI786612
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|6481455|gb|AW200726.1|AW200726
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CACCAGTCACCACCTGGGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192294924|gb|FG986647.1|FG986647
genomic: CACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|209711074|gb|BW676430.1|BW676430
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: AGTCGCCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGAACCGAGTGCTATATGCATTACCCGTTTTATTCTTCACTTGTTTCGCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctttaaccttttccaccccaataagccaaaaagctttaccatgctactatttttttctgctttccttttcatgattcgttttttcattctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacccc