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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCCCATTGTCCAGCATTTACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaaaaatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcag

Basic information

species Glycine max
transcript GLYMA11G06610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 7
TTTGTCCCATTGTCCAGCATTT---ACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaaaaatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcag
    || ||  |  |||| |||   || |||   |||||||||||||| ||| |  | ||| |  | |||||||||||||||||||| ||||||||| | ||||||   | |      || ||  ||| |   || |||    || || |                        ||| | |  || ||||     |          |  |||||  | |                                                                     
---ATCACAGCGATCAGCCTTTCCGACTAGAACTTCTCCTCCAGCAGAATCTCTGACCAAAGCGATACGTGCCTGTCATTCCCAGCCTTTGTCCATGATGGAGgtaggtaacccaagtttcttacgatga-tcttgcaagttgcaattgt------------------cttgttatggagtctggctcttccacatctgccaatcatggtgcacccaatcat------------------------------------------------------------------

upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 4
TTTGTCCCATTGTCCAGCATTT---ACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaaa-aatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcag
    || ||  |  | || |||   || |||   |||||||||||||| ||| |  | ||| || | |||||||||||||||||||| ||||||||| | ||||||   || | | || |   ||  |   |  || |||    || || |                        ||| | |  || ||||     |          |  |||||  | |                                                                     
---ATCACAGCGATCGGCCTTTCCGACTAGAACTTCTCCTCCAGCAGAATCTCTGACCAAAGCTATACGTGCCTGTCATTCCCAGCCTTTGTCCATGATGGAGgtaggtaacccaagtttc--ttacaatgatcttgcaagttgcaattgt------------------cttgttatggagtctggctcttccacatctgccaatcatggtgcacccaatcat------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999659|gb|BI320484.1|BI320484
EST:     TAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAG                         TATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGC
genomic: TAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaaaaatct ... ttgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGC