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TCGCGATATCGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgctaatcagcaaaaaaaaataaagggttttattttttggggtgaaaggagaaaaggaaagaaaaaaaaattcacatgttcgtttttcttttatt...
species | Glycine max |
transcript | GLYMA11G06250.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|22931738|gb|BU548877.1|BU548877
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|213618240|gb|DB973010.1|DB973010
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|9258485|gb|BE346632.1|BE346632
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|254317661|gb|GR826645.1|GR826645
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|14259137|gb|BG882045.1|BG882045
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|14259185|gb|BG882093.1|BG882093
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|19348943|gb|BM893475.1|BM893475
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|209714671|gb|BW674234.1|BW674234
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|7684855|gb|AW755503.1|AW755503
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|209697502|gb|BW670003.1|BW670003
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
genomic: AGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgcta ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCGATATCGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGgttagtgctaatcagcaaaaaaaaataaagggttttattttttggggtgaaaggagaaaaggaaagaaaaaaaaattcacatgttcgtttttcttttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa