1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAACATTGGGATCATGGATGCGGCTTACTTCGTCGGCAGATCTGAGATTCTTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttattttcgatcctatttctccatcaaattcaatcaggtttaggtttgtgtttaatttccgatcgatgatttcttactggaccttctattttcttgcatcgttatactttcag
species | Glycine max |
transcript | GLYMA11G05560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|208111382|gb|GD909100.1|GD909100
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|193581813|gb|FK533140.1|FK533140
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|207710806|gb|GD691756.1|GD691756
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|151397172|gb|EV267045.1|EV267045
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|193416805|gb|FK383309.1|FK383309
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttatttt ... atactttcagGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATTGGGATCATGGATGCGGCTTACTTCGTCGGCAGATCTGAGATTCTTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttttattttcgatcctatttctccatcaaattcaatcaggtttaggtttgtgtttaatttccgatcgatgatttcttactggaccttctattttcttgcatcgttatactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA