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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGCGCCAAACCATGTCGAAGGCGCGTGTCTACACAGATGTCAATGTCCTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttccgaaccctaatttttatgttgtttttttcttctgatccccaaagtgaacaattcacatgaagggggattttattgtatgatcttagagtct...

Basic information

species Glycine max
transcript GLYMA11G05340.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0129g00410.t01 (Vitis vinifera), 5'ss of exon 1
-CGACGCGCCAAACCATGTCGAAGGCGCGTGTCTACACAGATGTCAATGTCCTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgta-atgt-----------tccgaaccctaatttttatgttgtttttttcttctgatccccaaagtgaacaattcacatgaagggggattttattgtatgatcttagagtct
 |||||   |   ||||||| || || || |||||| | || ||||| || |||||||| ||||| || ||||||||||| ||||||||| |||| |||||||| || |           ||  ||||||||||     | | ||||||||||||| |        |      || ||  | |  |   ||   || | ||||          
CCGACGTCGCTC-CCATGTCCAAAGCTCGAGTCTACGCCGACGTCAACGTTCTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcgattttctcctcttaaccctaattccggaggtttttttttcttctggtttttgtcttaggttgttgactgggatcg--tttaatttttgtgat----------

upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 1
CGACGCGCCAAACCATGTCGAAGGCGCGTGTCTACACAGATGTCAATGTCCTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatg-----ttccgaaccctaatttttatgttgtttttttcttctgatccccaaagtgaacaattcacatgaagggggattttattgtatgatcttagagtct
       ||| | |||||| |  || || |||||| |||| |||||  | |  ||||| | ||| || ||||| ||||||||||||||| |||||||||||||||      |    ||||||||||| |   ||  ||       |   |  |||   |  |    ||   | |  |   |  |  ||  |||  | |       
-------CCAGATCATGTCCAGTGCTCGAGTCTACGCAGACGTCAACATTCACCGCCCCAGAGATTACTGGGACTACGAGTCTCTCACCGTTCAATGGGGgtaatcactactcataaaccctaatttcttctttccttccccacccctttttccactattgat--ctcgtgttatagtcaacatgtttccatgtccctgtta---

upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 2
CGACGCGCCAAAC--CATGTCGAAGGCGCGTGTCTACACAGATGTCAATGTCCTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttccgaaccctaatttttatgttgtttttttcttctgatccccaaagtgaacaattcacatgaagggggattttattgtatgatc--ttagagtct
 |||| ||||      ||||| ||||| || || ||||||||||| |||||||  || || ||||| |||||||| |||||| | |||||| | ||||||||||||  | |    |  |    || |     ||| |   | || |   ||||  ||  | |   | ||    ||| |   |   | || |||   ||||  | 
-GACG-GCCAGGTGTTATGTCCAAGGCCCGGGTTTACACAGATGTGAATGTCCAACGTCCGAAAGATTATTGGGACTACGAGGCCCTCACCGTCCAATGGGGgtaagttccatggctattcgattcactccctttatgcttccttaattccaa--tgttctacagagatatctgggcacggtgaggaatcatcgactagaaacc

upper sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 2
CGACGCGCCAAAC--CATGTCGAAGGCGCGTGTCTACACAGATGTCAATGTCCTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttccgaaccctaatttttatgttgtttttttc-ttctgatccccaaagt-------gaacaattc-acatgaagggggattttattgtatgatcttagagtct
 |||| ||||      ||||| ||||| || || ||||| ||||| ||||| |  || || ||||| ||||||||||||||| |||| ||| ||||||||||||| || ||||    |||  ||    | ||  ||| |  ||| | | ||| | ||       | |    || || ||| |  |   |||  |||| ||  |        
-GACG-GCCAGGTGTTATGTCCAAGGCCCGAGTTTACACGGATGTGAATGTTCAGCGGCCGAAAGATTATTGGGATTACGAGGCTCTTACCGTTCAATGGGGgta-tgctccgt-tactatcttcctcgctgcatttatgattccgtttccctaggtctcttagggatgtctctacttgacgaagctctttcgtgtaggaattc-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193612756|gb|FK563137.1|FK563137
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|213592666|gb|DB955810.1|DB955810
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|5760973|gb|AI966336.1|AI966336
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|207720772|gb|GD701815.1|GD701815
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCA-TGGG-                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAA
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAA
EST: gi|192297038|gb|FG990324.1|FG990324
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAGTATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|192334448|gb|FK025569.1|FK025569
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|213592872|gb|DB969838.1|DB969838
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
EST: gi|5752761|gb|AI960048.1|AI960048
EST:     CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGG                         TGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG
genomic: CTTCGCCCTAAAGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGgtaatgttcc ... ttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAG