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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTATCTGATATCTCGGTCTGAGTGGCAGATCCGCGCCGATGGTGTGAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacgatttttttcatctgaatctcctttttcgtttctgttgctttatccgaatttcttcatctcatcctgtatataaataatattacagaaatta...

Basic information

species Glycine max
transcript GLYMA11G04420.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408863|gb|EV278671.1|EV278671
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|12773182|gb|BG238109.1|BG238109
EST:     AAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: AAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|298183465|gb|HO028678.1|HO028678
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|192298731|gb|FG990997.1|FG990997
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|208158913|gb|GD954746.1|GD954746
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|192312780|gb|FK003992.1|FK003992
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|298197449|gb|HO044928.1|HO044928
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|192295310|gb|FG985964.1|FG985964
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|192312779|gb|FK003991.1|FK003991
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|192332695|gb|FK025352.1|FK025352
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|298196857|gb|HO041600.1|HO041600
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|298180781|gb|HO022220.1|HO022220
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAGACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|208169089|gb|GD969556.1|GD969556
EST:     GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: GAGCGAAAACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
EST: gi|10848287|gb|BF071708.1|BF071708
EST:     AACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAG                         TTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA
genomic: AACGTTATTGGGGCAGAAATAAAAAACCATAGAATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGCAGTGATTTGGAGATGGCAGACTTACCA