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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTTGTCCGTGATGCTCCTTCTGCCATAGCTGGGGACATAGTTCACGACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtataccccacgttacaaagttcacttctttttctctcatcatttctgggtttctttccttttcctcattctagaagcatgcatggtcatggagtatcaaaatcatattgtccacaattagacatttagttcctgaataattaataagtcccaagttcaattcgactgctgattaacttgttataattgtcag

Basic information

species Glycine max
transcript GLYMA11G02540.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193435824|gb|FK399428.1|FK399428
EST:     CCCAAAAAG-CCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: CCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|192310356|gb|FK002236.1|FK002236
EST:     ACGACGGTTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|209716106|gb|BW668645.1|BW668645
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|254341536|gb|GR852673.1|GR852673
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|298185066|gb|HO030279.1|HO030279
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|208216069|gb|GE008977.1|GE008977
EST:     CCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: CCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|213597069|gb|DB968164.1|DB968164
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|193305542|gb|FK270003.1|FK270003
EST:     ACGACGATTCA-CTCCCAAAA-GCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTT
EST: gi|193395721|gb|FK364024.1|FK364024
EST:     CGACGATTCAACTCCCAAAA-GCCCGGTTGACGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTT
genomic: CGACGATTCAACTCCCAAAAAGCCCGGTTG-CGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTT
EST: gi|298179000|gb|HO024735.1|HO024735
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: gi|213606574|gb|DB972509.1|DB972509
EST:     ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG                         GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT