Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctctttttttgtttttataaataattcttgatcatctcttttttcattttcttctttgcttgatgatatatagaattgccctcaacttatttttgtgatgaaccaaccttttttgctttttctttatcaagtttaattcttaattttgtgtatctttcag
Basic information
species | Glycine max |
transcript | GLYMA11G02400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G02400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g05520.1 (Oryza sativa), 5'ss of exon 1
GTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctctttttttgtt--tttataaataattcttgatcatctcttttttcattttcttctttgcttgatgatatatagaattgccctcaacttatttttgtgatgaaccaaccttttttgctttttctttatcaa--gtttaattct---taattttgtgtatctttcag
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GTGAAGAGGGGCCTCTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGCTGGAGCGAGGTCCCGGAGAAAGCCGgtacgccgcatatcgtcgatcgatcgattaatcccc-caatatcttgattgattga--tgaacattcaatgagatggatga--actatca--ttgcttgattgatgaac-attttcttgaggaactgatctgtcaattgctgaattgtgtgcaatgtggtggtttgtgaag
upper sequence: GLYMA11G02400.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G325907_T01 (Zea mays), 5'ss of exon 1
GTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctctttttttgtttttataaataattcttgatcatctcttttttcattttcttctttgcttgatgatatatagaattgccctcaacttatttttgtgatgaaccaaccttttttgctttttctttatcaagtttaattcttaattttgtgtatctttcag
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GTGAAGAGGGGGCTCTGGTCCCCTGAGGAGGACGAGAAGCTCATCAGGTACATCACCACCCATGGCTACGGGTGCTGGAGCGAGGTCCCCGAGAAGGCCGgtac----------gtatagatcgaggcggctatgttctctctctcttgaattgaatctt-----gatgcc--------ttgcctccaccgtgcatgcat-atagaccaatcagtttgtcgttg----------------------------------------
upper sequence: GLYMA11G02400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g00320.t01 (Vitis vinifera), 5'ss of exon 1
GTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctctttttttgtttttataaataattcttgatcatctcttttttcattttcttctttgcttgatgatatatagaattgccctcaacttatttttgtga-tgaaccaaccttttttgctttttctttatcaagtttaattcttaattttgtgtatctttcag
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GTAAAGAGGGGGCTTTGGTCCCCTGAGGAAGACGAAAAGCTCATCAGATACATCACCACCTATGGCTATGGTTGTTGGAGTGAAGTCCCTGAGAAAGCTGgtctcacctctctctctct--------------------ctctctctccattctcttacaca---aaccacacatcccacacatctgaatataagctgaaaactgaaatggttttttcttttcttttcttttct--ttctggtcgaag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9902970|gb|BE611938.1|BE611938EST: CATCACCACTCACGGCTATGGTTGCTGGATTGAAGTTCCAGAGAAAGCTG GGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGA
genomic: CATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctcttt ... tatctttcagGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGgtctctctttttttgtttttataaataattcttgatcatctcttttttcattttcttctttgcttgatgatatatagaattgccctcaacttatttttgtgatgaaccaaccttttttgctttttctttatcaagtttaattcttaattttgtgtatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG