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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCAGGCTCGCTGCGGGTTCCGCCGATGGCACTCTTTCAATCTTCGATTCCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGgttcgtctttcgattcttttccactttcatttgcttttattcaataatctaatgtaattcggactagatcacttttattaaaacaccaataaataaattctaagttcattttctgtaattcggactaagattcagttatcgacgatacctacattgtgtgtgcttactctcccctgaaattgttaag

Basic information

species Glycine max
transcript GLYMA11G02070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603597|gb|DB966767.1|DB966767
EST:     CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGG                         GTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGT
genomic: CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGgttcgtcttt ... aattgttaagGTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGT
EST: gi|21995086|gb|BQ786614.1|BQ786614
EST:     CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGG                         GTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGT
genomic: CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGgttcgtcttt ... aattgttaagGTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGT
EST: gi|151395175|gb|EV265046.1|EV265046
EST:     CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGG                         GTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCGGAATATGGT
genomic: CCCGCGAGCCGCCTTCTTCTTCCTCCCTCCGTTCTACTTTCAAATCTAGGgttcgtcttt ... aattgttaagGTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGT