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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggtaggtgaaacttggttttgatttgaattctgtgttttcgccatctgatatgatgtttatttttcag

Basic information

species Glycine max
transcript GLYMA11G01940.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 4
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 4
CGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggtaggtgaaacttg-gttttgatttgaattctgtgttttcgccatctgatatgatgtttatttttcag---
 ||||| || || ||||||||||| ||||| |  ||||| |||||||| || ||||| ||||| ||  | || ||  ||||||||||||||||||| ||||| ||          ||| |||  |      ||||| || |||   | |||| ||   | |    ||||||  |  | |  || |||  |   
TGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAAGgt-tgt---------tttcttgacaaaacccacttgagtattgtggttaattatgaagtgtga--atctgacttattatggatgtttttgtag

upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 4
CGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggtaggtgaaacttggttttgatttgaattctgtgttttcgccatctgatatgatgttta----tttttcag--------------------------------------------------------
 || || || || ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| || |  ||    || |||||||||||||| ||||||||  | ||    |     |       |   | ||||  |   |                 ||  | |    ||| |||     ||| ||                                                         
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcag

upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 4
CGTGTTCTCTTCTTCAGCAACTGTATATGGTTGGCCAAAGGAAGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggtaggtgaaacttggttttgattt------gaattctgtgttttcgc-catctgatatgatgtttat--ttttcag--
 || || || || ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| || |  ||||  || |||||||||||||||||||||||  | ||    |     |       |   |  |||  |   |      |||     ||||      ||  | |    |||  ||     || |   
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCACTATGTGCAACAAATCCATATGGACGAACTAAGgtatgttttgggaaatgaacagaggcaatattttctgttcaggcatactaaagaaacagatgttggattgcacataaaggaatgactagaacctttaata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902956|gb|BE611924.1|BE611924
EST:     GAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCATAGCCAGATTGG
genomic: GAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGG