1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGCCGCCGCAGTGGTTAACTCCTCGGACCGGAAGCCCGGATTCGTCTCTCCTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAGgtgcatttcttagcttcatagttacttcgataatttctatgcattgcaaatttagcacacataattgtcgcatttaagcttgtcctcggatatttatttatttatttatttatttattgatgtag
species | Glycine max |
transcript | GLYMA11G01670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAG AATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACCEST: gi|213592508|gb|DB971650.1|DB971650
genomic: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAGgtgcatttct ... attgatgtagAATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACC
EST: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAG AATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACCEST: gi|31561071|gb|CD486909.1|CD486909
genomic: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAGgtgcatttct ... attgatgtagAATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACC
EST: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAG AATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACC
genomic: CTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAGgtgcatttct ... attgatgtagAATGACAAATTCAATGTGTCTCGGTTAGCTCTTAGCCACTCTAGGCGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGCAGTGGTTAACTCCTCGGACCGGAAGCCCGGATTCGTCTCTCCTTCATGGAGGAACTGCAAGGTCACATCTCCAATTCTTCGCCTCTCTCAGgtgcatttcttagcttcatagttacttcgataatttctatgcattgcaaatttagcacacataattgtcgcatttaagcttgtcctcggatatttatttatttatttatttatttattgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA