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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTTGGTGCTTACACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgattgttcaaagttgacagaatctctctcattcattcattctttcattctcagctcaatttgcaaaatccaaattttttatcttccaattgtctgatactcag

Basic information

species Glycine max
transcript GLYMA11G01380.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057972|gb|AI736448.1|AI736448
EST:     CACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAG                         AGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
genomic: CACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
EST: gi|298199192|gb|HO042555.1|HO042555
EST:     CACCGGGAAAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAGAG                         AGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
genomic: CACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
EST: gi|298170232|gb|HO018856.1|HO018856
EST:     AAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAG                         AGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
genomic: AAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
EST: gi|298188565|gb|HO035258.1|HO035258
EST:     CCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAG                         AGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
genomic: CCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
EST: gi|298185092|gb|HO030305.1|HO030305
EST:     GTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAG                         AGACACCGGCACTGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACTCCTT
genomic: GTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
EST: gi|192296463|gb|FG989828.1|FG989828
EST:     CACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAG                         AGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT
genomic: CACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgat ... tgatactcagAGACACCGGCACCGGCATGGGTCAAGCTTTTCGGAAGCTATTTGACACCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGTTGGTGCTTACACCGGGAGAAGAAAGTTCTTGGAAGGAAGGAAGAAGCCAAAAGGCAAAGgttggttgattgttcaaagttgacagaatctctctcattcattcattctttcattctcagctcaatttgcaaaatccaaattttttatcttccaattgtctgatactcag

- - - - - - - - - - GGAGAA
- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG