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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCGTTTAGGTGTACAGATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctctctctctctgagattggaagcattgccatcaattcaattaattatcttaaacttattttcatccacttcgataacag

Basic information

species Glycine max
transcript GLYMA11G01340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165204|gb|HO011253.1|HO011253
EST:     GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCA
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: gi|17519493|gb|BM188535.1|BM188535
EST:     GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: gi|213593699|gb|DB971721.1|DB971721
EST:     ATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
genomic: ATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: gi|192326479|gb|FK017256.1|FK017256
EST:     GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: gi|298182210|gb|HO026385.1|HO026385
EST:     GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCA
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: gi|298174665|gb|HO014696.1|HO014696
EST:     GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA                         TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCG
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA