Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag

Basic information

species Glycine max
transcript GLYMA11G00890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T08 (Zea mays), 5'ss of exon 1
---CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattc---tctcctttaaact--ctgatttctttcttcttcttccg-tgattccacag---------------------------
   |  |||   |   || ||   ||| ||| |   |  || | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||   |||   ||        || ||||||||||  ||    | |||| |    |                           
TACCGTCCGATACCCCAAGCAC--CAGCGCGGCGGCGGCGA-CCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 2
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattc---tctcctttaaact--ctgatttctttcttcttcttccg-tgattccacag---------------------------
                         ||| |   ||    | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||   |||   ||        || ||||||||||  ||    | |||| |    |                           
-------------------------GCGGCGGCGA----CCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctt--taaactctgatttctttcttcttcttccgt-gattccacag------------------------------
   || ||      | |   || | | |  |        | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||    |||  |    ||   |   ||| |||||  ||||| | |    | |                              
AGACCCCAAGCACCAGCGCGGCGGCGGGGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttgcttgtgtcgattgctttttttctttatccgttgctgatgcggttctgtggttgcgttacatcatttatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 1
-----------------------------------------------------------CAGCCGCAGCTTGAAACAG-AGCAGAGCGACCTTGAAGA-----GCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag
                                                           |  |||   |   || ||  |||   ||| |   |  |       | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||                                               
TAGTAGTCCGCTCTGCCTCCGAAGTGCTTTCTCCCGCAGAGCAGCCGACAACTCTCTACCGTCCGAGACCCCAAGCACCAGCGCGGCGGCGGCGgcggcggcgaccatggctgtcgggaagaacaagaggatctccaagggaaagaagggtggcaagaaaaagacgttagtttgcttgcctgttatatcccagttcttca----------------------------------------------

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T04 (Zea mays), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAG-AGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattc---tctcctttaaact--ctgatttctttcttcttcttccg-tgattccacag-------------
   || ||      | |   || |  ||| |   |  || | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||   |||   ||        || ||||||||||  ||    | |||| |    |             
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGA-CCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgata

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T03 (Zea mays), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAG-AGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattc---tctcctttaaact--ctgatttctttcttcttcttccg-tgattccacag---------------------------
   || ||      | |   || |  ||| |   |  || | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | ||  |  |  | |  || |||   |||   ||        || ||||||||||  ||    | |||| |    |                           
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGA-CCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgatacttcttttatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 1
CAGCCGCAGCTTGAAACAG-AGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattccc-ttcttcactcttttattctctcctttaaact-ctgatttctttcttcttcttccg-tgattccacag---------------------------
 || |    |   || ||   ||   ||| |   |   | | ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||  ||| |||   | | |   |||||| |  | ||    |||   |    |   || ||  |||||    |||| | |||| |    |                           
TAGTCTGTACCCCAAGCACCGGCGCGGCGGCGGCGGCTA-CCATGGCAGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGTAAGAAAAAGACgtaagtttgcttgcatgttcttcccgttcttcacatctatctcggtcaattgcttcgtttctggagcttctgctgatgcggttgtgtgtctgtgttccttttgtcttacag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 2
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcc-cattcc--cttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag------
                                                     ||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||   ||  |  |||  |||   ||| | |    | | | ||||    || |||  || ||| ||| ||||   |         
----------------------------------------------------GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGCgtgagtgcaatatcacaacttaatcaaattttgaattggccttatcaacttctgttgcttgatttttcatcc-tgatataatcaatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCT-TGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttct----tcttccgtgattccacag---------------------------
   | ||   |    | |   |        || |    ||| ||||||||||| ||||| ||| |||| |||||||| |||||||||||||||||||||  || |  | ||  |  ||   | |    ||||  |     |  ||  | | ||||| || || |    | ||  | | |||  |                             
-CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgt-aacgtccgctggctgtctgagctcttta--cgacagtcgaatgtgtaatttcatttttgtgagttattgagggtttctgctaacttgacgacgtgggagtggtgtgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S174_49V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag----------------------------------------------------------------------------
                                         ||||| ||||| ||||| ||| | ||||||||||| |||||||||||||||||||||  ||  |  |||||   ||   || |||| |   ||||||| |    | || || ||| | |   | | ||       |||||                                                                            
-----------------------------------------ATGGCGGTCGGGAAGAACAAGCGCATTTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtacgctcccataatctctctctctctctctctctctccctcgctcgct-atctctctttctctatcccccccactcacagtggtgcgtttattagggttttgatgtgtttgtgaggatttgagatgacatggcgatatcttctgagtcctacgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
--CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattccctt---cttcact--cttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag-------------------------------
  | ||| |    ||   | |  | |  |   | |    | | ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||  ||       |  | ||||   || || |  ||    | |    |||  |  | ||  ||  |||    | |||| |||       |                               
CCCTGCCTCCCACTGCTGCCG--CTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGA---GCGACCTTGAAG--AGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgt--tagtgcccattcccttc----------ttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag--------------------------------------------------------------------------
      ||||| | | | ||||      ||  | | ||    ||| ||||| ||||| ||||| ||| | ||||||||||| |||||||| ||||||||||||  ||  |  |  ||| | | ||           |||||   |  | |   ||    ||    |  | |  |   | | |||  |||||      |                                                                          
----TTCAGCTCGCA-CGGAGCTTGTTTGCTGCTTCGACAGCAGCCATGGCCGTCGGCAAGAACAAGCGTATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtacttctttccagtacttttctactgtgaattcacggctccactgcgtctgccaagtgtttgtgtactagctgt-cttgagtgatggtttggtttctagggtttagtgtgcttgtgtggtatatgcggaggttctaactagagcgacgatgatttttgcactgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S80_120V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactctttt--attctctcctttaaactctgatttctttcttcttcttccgtgattccacag--------------------------------------------------
                                       | ||||| ||||| ||||||||  | || || |||||||||||||| ||||||||||||  || || || |     || |||| || |     | |  ||  ||     ||    | |  |  | |   |    | ||| |                                                     
---------------------------------------CCATGGCGGTCGGCAAGAATAAACGTATCTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAATgt-agcgctctccttctccttctctttacaggaatggctaattcgctgtcctgctgcgctggtttgagtttaggtttcgaggtttgtgtttgtttccacgcattgacgcggaggacggtgggatgtaatgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S92_47V6.2 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattc-------ccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag---------------
| | |    |           | |      | |    ||| ||||| ||||| ||||| ||| ||||||||||||| || ||||| || |||||||||  ||  ||    ||||       | || |    | |||  |    |  | |    | |||    ||    ||       |||||                     
CCGTCTTGCCAGCCGCTGCTTCTGCCTCGTCCTCTGCAGCCATGGCGGTCGGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcag

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattccctt-cttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||       |     ||  |    ||  | ||| ||||   ||| |                               
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttc--ctcag-------------------------------

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag
                                                     ||||| ||| ||||||||||||||||||| || ||||||||||||  || ||||      | |  | |    |||  ||| | |   || |  |||  | || ||                       
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAATgtaagtgtttgg-cgcagcgttttgcttcgattttattgcttgatttcttctgtcgttag---------------------

upper sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||      | |  | |    |||  ||| | |   || |  |||  | || ||                       
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgttt-cgcgcagcgttttgcttcgattttattgcttgatttcttctgtcgttag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180407|gb|HO021960.1|HO021960
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|207762830|gb|GD734713.1|GD734713
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|6072640|gb|AW102027.1|AW102027
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|24135455|gb|BU925965.1|BU925965
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298168802|gb|HO009732.1|HO009732
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCCAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|209702288|gb|BW652368.1|BW652368
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|15813962|gb|BI786237.1|BI786237
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|6072903|gb|AW102290.1|AW102290
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298174443|gb|HO014588.1|HO014588
EST:     GGAAAGAATAAGAGGATTTCTAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|8826958|gb|BE210688.1|BE210688
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298179710|gb|HO024925.1|HO024925
EST:     GGAAAGAATAAGAGGATTTCTAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298170667|gb|HO019291.1|HO019291
EST:     GGAAAGAATAAGAGGATTTCTAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|23727546|gb|BU761807.1|BU761807
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|193608814|gb|FK566032.1|FK566032
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCACGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|207762323|gb|GD734262.1|GD734262
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|192307342|gb|FK000726.1|FK000726
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298194378|gb|HO041026.1|HO041026
EST:     GGAAAGAATAAGAGGATTTCTAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|4292422|gb|AI437760.1|AI437760
EST:     AAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: AAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|37995080|gb|CF806669.1|CF806669
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298193302|gb|HO033736.1|HO033736
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298187904|gb|HO031861.1|HO031861
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|19053253|gb|BM731920.1|BM731920
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|23727433|gb|BU761746.1|BU761746
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298187155|gb|HO034304.1|HO034304
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|7685314|gb|AW755962.1|AW755962
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|207755950|gb|GD728431.1|GD728431
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAGAGAAGGGTGGCAAGAAGAGAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGG
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGG
EST: gi|4313563|gb|AI460682.1|AI460682
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|17021860|gb|BM092894.1|BM092894
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|11688279|gb|BF595955.1|BF595955
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|207703727|gb|GD686291.1|GD686291
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|19269561|gb|BM885817.1|BM885817
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|213607261|gb|DB957125.1|DB957125
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|7285795|gb|AW598282.1|AW598282
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|298176257|gb|HO015662.1|HO015662
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|192317788|gb|FK010178.1|FK010178
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|193327655|gb|FK297358.1|FK297358
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|23727850|gb|BU761961.1|BU761961
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|51335530|gb|CO979396.1|CO979396
EST:     GGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCNNN
genomic: GGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|192308958|gb|FK001734.1|FK001734
EST:     CAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: CAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|193458171|gb|FK422490.1|FK422490
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|23064624|gb|BU579397.1|BU579397
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
EST: gi|4437091|gb|AI522956.1|AI522956
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gattccacagCGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattcccttcttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA