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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACTCCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTGGGTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgtttcttcaatttctctaacttgagggacgtagccattgcaagatttatactattaatcaaataggggtatttgtgttaatgagtcatctagcatattat...

Basic information

species Glycine max
transcript GLYMA10G44440.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g67420.1 (Oryza sativa), 5'ss of exon 4
AGTACTCCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTGGGTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgt----ttcttcaatttctctaacttgagggacgtagccattgcaagatttatactattaatcaaat-aggggtatttgtgttaatgagtcatctagcatattat
|||      |||||||||||  | | |   || |||  |||||||||||||||| | ||||||||||| || ||||| |||||  | || ||  | ||||||    ||||  |    || | | |||| |  |  |||  |       || ||  |  |    |  | ||   |||   |       | |   | |  | |    
AGTGTATTAGAAGAAGATGATATATGTGTTGTGGCAAAATTATTGGGTGATCTTATGGCTTATCGCGCATCTGGAACTGGCCACCTTGAGCTTATAGCAGgttggtttctgtataccctgtgatttgaagttc--agctctgctctctttaatcttggtgcatatctgagatatatcattcccttcaaatggacaaaaacac---

upper sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G176542_T02 (Zea mays), 5'ss of exon 4
AGTACTCCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTGGGTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgtttcttcaatttctctaacttgagggacgtagccattgcaagatttatactatt-aatcaaataggggtat-ttgtgttaatgagtcatctagca--tattat
|||      ||||| |||||  | | |   || |||   ||||||||||||||| | ||||||||||| || ||||| |||||| | |||||| | |||||||  ||   || |  | || ||    ||  | ||  |    | |      |  | ||| | ||| |  ||| ||    |||||| | |  |  ||   || | 
AGTGTGTTGGAAGATGATGATATATGTATTGTGGCAAAGTTATTGGGTGATCTTATGGCTTATCGCGCATCTGGAACTGGCCATCTTGAACTCGTAGCAGgttagtt---ttccatttacctgcaatacaaaacccatatctgttgagccttgctgaattatatatgattatatttccctaatgaataaattcacaagcatca-

upper sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 2
AGTACTCCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTGGGTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCAGgtttcttcaatttctctaacttgagggacgtagccattgcaag-atttatactattaatcaaataggggta-tttgtgttaatgagtcatctagcatattat-------
||| |    || || ||||| ||  | || || || |||||||| |||||||||||||||||||| || || || || || ||| ||||||||||||||||||     | | |   | |||   || | | |    || |  | ||||||  |   ||  | ||   | |  ||| || |  |   | || ||     ||         
AGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCAGgtt-----agtgt---tgact-acggtatggaatttttacttgcatttatgatcacaacaacatgcagtttctttttggtgttttattatgtaatgcttttccaattgc