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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatttttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt...

Basic information

species Glycine max
transcript GLYMA10G43990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G033208_T01 (Zea mays), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcag-tttttacttctttttttcatttttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatt---taatttaagtgcattgt
||||   ||||||||||| ||||| ||||| ||||| || || || |||||||||||||| || || ||||| ||||| || || || ||||  ||| |||| ||     ||  |  ||  |   |||   |  |     | ||  | |||  |  ||  |||         || | | | ||     || |   | | |    
CCCCTACTGGTTCAACCGCGACCGCTTCGTCCTCTCCGCCGGCCACGGCTGCATGCTCCAGTACGCCCTCCTCCACCTCGCCGGATACGACAGCGTTAAGgtaaggcggctagctgattcatctgtttgcatcttggtttttttttgtgtgcgtgtgatgtgtcccgggttggttggttggatcggcgaaatcgggggta----

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt--tttctactt--tcactattg------ggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt--------------------------------------------
|||   |||||||||||||||||| |||||||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||  || |||||| ||  |  ||||| | ||| |||  |||| |  |  ||   ||||      | ||| |||        |       || |  || ||  || || | |  ||    |                                            
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt------------tttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt----------------------------------------------------------------------
 ||    ||||| |||||||| |||||||||||||||||||||||||| |||||| | ||||| ||||| ||||||||||||||||| ||||  |||  |||  || ||  |||  | |  | |||            |||    || || ||||| || |   | | || |       |  |  ||||    |     ||  |||  || |                                                                      
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt--tttctactt--tcactattg------ggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt-----------------------------------------
|||   |||||||||||||||||| |||||||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||  || |||||| ||  |  ||||| | ||| |||  |||| |  |  ||   ||||      | ||| |||        |       || |  || ||  || || | |  ||    |                                         
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt-acttc-------tttttttcatttttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt
||||   |||||||| ||||| || ||||||||||| ||||| || ||||| ||| | || |||||| | ||||| |||||||||||||||| |||| |||| | ||||| | |||       ||||||| |  | | || ||| | | ||   | |   |      ||  ||       | |  ||| ||||    ||         
CCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGgtgaattttttatttccagtgcattttttttaaatgtatatttttaatctttttattt-tttatttttggtatatgggctttgccagagtttagcaaaaca-------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S120_164V6.1 (Physcomitrella patens), 5'ss of exon 2
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatttttctactttcactattggg-agtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt------
                                               | ||||||||||| || |||||||| ||||| ||||| || |||| |||||||||  ||||             |||||   ||||    |||  ||   || | ||| |   | |  |    || |   |  | | |        ||| || |      
-----------------------------------------------GATGCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttacgaac-------tcattgacctaccgagactggtgtacagcgtctcaggttttttgtaaatatatgtatgtactctttgactgctgccttttggacaa

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ07676 (Selaginella moellendorffii), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatttttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt
|||    ||||||||| | || || ||||||||||| ||||| || || |||||||||||||| || || || || ||||||||||| |||| |||  ||||  | |    || | ||  |  | |||    ||||  ||||    |||   ||          ||  ||||   ||     ||  ||  ||        
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggct----ctccattgatctagtttcgagctttt-ctatcaa-agttcttc-------ctttcaacatggatttcttgcttgtttccag--------

upper sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ07729 (Selaginella moellendorffii), 5'ss of exon 1
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatttttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt
|||    ||||||||| | || || ||||||||||| ||||| || || |||||||||||||| || || || || ||||||||||| |||| |||  ||||  | |    || | ||  |  | |||    ||||  ||||    |||   ||          ||  ||||   ||    |||  ||  ||        
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggct----ctccattgatctagtttcgagctttt-ctatcaa-agttcttc-------ctttcaacatggatttcttgtttgtttccag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618089|gb|DB963722.1|DB963722
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACNATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|8825831|gb|BE209561.1|BE209561
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|209703817|gb|BW656895.1|BW656895
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|209701314|gb|BW655909.1|BW655909
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|213602270|gb|DB958530.1|DB958530
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCG
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCG
EST: gi|209724875|gb|BW669564.1|BW669564
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCC
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCC
EST: gi|209698042|gb|BW675661.1|BW675661
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGA
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGA
EST: gi|213611583|gb|DB960863.1|DB960863
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAG
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAG
EST: gi|209715669|gb|BW674355.1|BW674355
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|213591657|gb|DB969757.1|DB969757
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGA
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGA
EST: gi|209704746|gb|BW656700.1|BW656700
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|209700040|gb|BW652940.1|BW652940
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
EST: gi|18692759|gb|BM521607.1|BM521607
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAG                         GAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagttttt ... tacatgatagGAACAAGACCTTAAGGAATTCCGACAATGGGGAAGCAGAACTCCTGGACAT