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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgttggtgttttaactgtttattttctcctattagtacataataatataaggtttgcatagttgaatttgacag

Basic information

species Glycine max
transcript GLYMA10G43550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 1
ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgttggtgttttaactgtttattttctcctattagtacataataatataaggtttgcatagttgaatttgacag
 || |  || ||||| || || ||||| |||||||| ||||| || |||||||| || || ||||||||||| |||||||| ||||| || ||||||||||  | |  | |||   | | |                 |   ||||       | |    |||||    || | | ||| |||        |      | | ||||| | | | | |                          
GCCATACGTGCTCACCACGCCGCTCTACTACGTCAACGCCCCGCCGCACATGGGGAGCGCCTACACCACCATTGCCGCCGACGCCATCGCCCGCTTCCAGgcaagc--aactaaagcgagca----------------agcctatgcgcgcgcgtttgcgttccattgctgctcgcgttctaatcccagtctagggattttgagtacgtcaaactgtt-------------------------

upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 1
ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaact-ttggtccaattccagaaa--tgttggtgttttaactgtttattttctcctattagtacataataatataaggtttgcatagttgaatttgacag
 ||||  || ||||| ||||||||||| |||||||| || || || || ||||| || || |||||||||||||| || || ||||| || ||||||||||  | | |  | | |        ||  |  | || |||  |  |  ||  | | |  || |    || ||  ||    ||       ||       ||  ||                                            
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGgcaagcct--ccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact--------------------------------------------

upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 1
ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgttggtgttttaactgtttattttctcctattagtacataataatataaggtttgcatagttgaatttgacag
  | ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||   || || |||  |  |    || |    ||||| |||| |  ||      || || |   ||  |  || |||  || |||| ||                                                     
GACATTTGTCCTCACCACTCCTCTTTATTACGTTAATGCCCCTCCCCACATGGGTAGTGCTTACACCACTATCGCCGCCGATTCAATTGCTCGTTTCCAGgtttgtttctcaatcagtctctgacttaa----agtttcaatttttaaagg--aatcaaagtgttgattttatgttgt--tatctgtgtag----------------------------------------------------

upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
ACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttatctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgttggtgttttaactgtttat-tttctcctattagtacataataatataaggtttgcatagttgaatttgacag
  | || |||||||| ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||| || || || || ||||||||||| || |||||            | ||    |  |||||||   |||  ||| | |    | ||     |   ||  ||| | ||  |||   |||| |  ||| |    || ||    ||    | ||                        
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgta-----------ccctgttgt--ttgatttc--ttttgattgtat----tcggcttcgtggaagggatgattgttattt---tgttaacatttgtttggttggtgagaaagcggagaaaa----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711276|gb|BW665328.1|BW665328
EST:     TGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAG                         CGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGG
genomic: TGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttat ... aatttgacagCGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGG
EST: gi|8826928|gb|BE210658.1|BE210658
EST:     TGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAG                         CGGCTATTGGGGAAGAAAGTTATATNTATTACTGGCACGGATGAACACGGG
genomic: TGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGgttaacttat ... aatttgacagCGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGG