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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGgtatttattcattcgccaatttccacttcactcttctgctactgctactactatctacaagagtgaggatcgccttgcggtttttggtttgatttaagtc...

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGgtatttattcattcgccaatttccacttcactcttctgctactgctactactatctacaagagtgaggatcgccttgcggttt-ttggtttgatttaagtc---
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TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgt--gctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggt--gggccggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603386|gb|DB966617.1|DB966617
EST:     ACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAG                         GGAAAATCAGTGGAGGTTCGGCAGGCTGCNGGGTTATATCTGAAGAATAAC
genomic: ACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGgtatttattc ... tattgaacagGGAAAATCAGTGGAGGTTCGGCAGGCTGCGGGGTTATATCTGAAGAATAAC
EST: gi|23731333|gb|BU763784.1|BU763784
EST:     ACCTCCCTGACTTCAACTATTACCTCGCCTTCATCTTCTCCCGTGCCGAG                         GGAAAATCAGTGGAGGTTCGGCAGGCTGCGGGGTTATATCTGAAGAATAAC
genomic: ACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGgtatttattc ... tattgaacagGGAAAATCAGTGGAGGTTCGGCAGGCTGCGGGGTTATATCTGAAGAATAAC