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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAAAATTATGGTCCAATAGATCCGTGTTGCTAACCCACAGTCCCTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGgtgcgtttttttctcttccgatccatttcctcactcatttctcttcgatcttccaataatcattcaattctgcgtttctccttctcattgtttcgcccaa...

Basic information

species Glycine max
transcript GLYMA10G42940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346337|gb|BI971932.1|BI971932
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533316|gb|EH261449.1|EH261449
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533616|gb|EH261749.1|EH261749
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|213596831|gb|DB964094.1|DB964094
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533188|gb|EH261321.1|EH261321
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533627|gb|EH261760.1|EH261760
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533687|gb|EH261820.1|EH261820
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|213591852|gb|DB973417.1|DB973417
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTG                         ATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATT
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGgtgcgttttt ... aagttccaagATGGGTGTGGCTGAGAACATTCCCGATATGGAGGAGGGTACCTTGGAGATT
EST: gi|209727398|gb|BW669851.1|BW669851
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|13478635|gb|BG508033.1|BG508033
EST:     CACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120532915|gb|EH261048.1|EH261048
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|209697688|gb|BW655589.1|BW655589
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|120533425|gb|EH261558.1|EH261558
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt
EST: gi|213595962|gb|DB955998.1|DB955998
EST:     CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGTTCCAAG                   
genomic: CTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGC---T----Ggtgcgttttt ... aagt

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTAAAAAATTATGGTCCAATAGATCCGTGTTGCTAACCCACAGTCCCTCCCTCACCCACGTCTCTCCCCGCTTCAGATCTTAAACGTCTTTCGCTGgtgcgtttttttctcttccgatccatttcctcactcatttctcttcgatcttccaataatcattcaattctgcgtttctccttctcattgtttcgcccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc