1 5' 3' | 2 5' 3' |
GTGTTTTCATTGTAAGTGGAAGGGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGgtatatcctctttccttgtgtgtgttaggagcaggaagagtttgtggttactgcaaatcatattaatggttctttttacttgtttattttgttaatttta...
species | Glycine max |
transcript | GLYMA10G41680.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAG GACAAATCGAAATGCAGAATGGGATACTTGTATTCCAGTAEST: gi|298166487|gb|HO009926.1|HO009926
genomic: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGgtatatcctc ... ttttatccagGACAAATCGAAATGCAGAATGGGATACTTGTATTCCAGTA
EST: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAG GACAAATCGAAATGCAGAATGGGATACTTGTATTCCAGTACCTGATTTAGAEST: gi|193681828|gb|FK623710.1|FK623710
genomic: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGgtatatcctc ... ttttatccagGACAAATCGAAATGCAGAATGGGATACTTGTATTCCAGTACCTGATTTTGA
EST: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAG GACAAATCGAAATGCAGAATGGGATACTTTGTATTCCAGTACCTGATTTTG
genomic: TCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGgtatatcctc ... ttttatccagGACAAATCGAAATGCAGAATGGGATACTT-GTATTCCAGTACCTGATTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTTCATTGTAAGTGGAAGGGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTGAAAGGATGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGgtatatcctctttccttgtgtgtgttaggagcaggaagagtttgtggttactgcaaatcatattaatggttctttttacttgtttattttgttaatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc