1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCACTTCTCTTCCGTTCACCCTGGTTCCGTCACCGTTAACCTTGGCTCTTCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcactttctttttcctttttcttcaatatctcttattttctcatcatttttggatccaaaaaaaaagactcatttttttcttgatttgggttttt...
species | Glycine max |
transcript | GLYMA10G38840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|213618026|gb|DB963659.1|DB963659
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|192333018|gb|FK024667.1|FK024667
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|192295822|gb|FG990874.1|FG990874
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCATGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|7283825|gb|AW596427.1|AW596427
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|4293386|gb|AI442040.1|AI442040
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|15814188|gb|BI786463.1|BI786463
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|7283802|gb|AW596404.1|AW596404
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|254326313|gb|GR840905.1|GR840905
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|5606908|gb|AI901006.1|AI901006
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGAEST: gi|254320536|gb|GR826985.1|GR826985
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
EST: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAG GCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
genomic: TCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcact ... atgttggcagGCTGTTTGCAGTCGTGGATGACATTTTCTGTTTGTTTCAAGGTCATCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACTTCTCTTCCGTTCACCCTGGTTCCGTCACCGTTAACCTTGGCTCTTCCGGTCTCTTGGCCTATTCTCTTCACAAACAGAACCCCCTCCTCCCAAGgtccttcactttctttttcctttttcttcaatatctcttattttctcatcatttttggatccaaaaaaaaagactcatttttttcttgatttgggttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa