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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGAAGGGTATCGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTTGGCCGTGCTCGCACTGGTCAGgtttgtatcttttcttatcacaaaccctaattcctaccgatttttgttttgttcaattctttaatagtattcctaaagttttgtttttttaactaacttc...

Basic information

species Glycine max
transcript GLYMA10G38680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G62190.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAGGAGAAGGGTATCGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTTGGCCGTGCTCGCACTGGTCAGgtttgtatcttttcttatcac--aaaccctaattcctaccgatttttgttttgttcaattctttaatagtattcctaaagttttgtttttttaactaacttc
 |||| ||| ||||| ||| | || || || ||||||||    || || || |  |||||||||||| ||||||| ||||| || ||||| ||||||||||| |   | |  | ||   |         |  ||  ||    ||| | | |   | ||||  | ||   |    ||   |  |  ||| | |      ||| 
TAAGGCGAATGGTATTGAAGCTCTTTTCCCGATTCAGGCTTCCACGTTTGATATGGTTCTCGATGGTGCTGATTTAGTTGGACGGGCTCGTACTGGTCAGgtattggtttgattttgaaatttgggttttgcttattatgcgtttgtctctgtatgaatttgtcaagtttgaggcttttggat-atttatgtggaaggctt-

upper sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAGAAGGGTATCGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTTGGCCGTGCTCGCACTGGTCAGgtttgtatcttttcttatcacaaaccctaattcctaccgatttttgttttgttcaattctttaatagtattcctaaagttttgtttttttaac-taacttc-
||||  |||||| |||||| || |||||||||||||||| ||||| ||||| ||| |||| ||||| ||||||||||||||||| || || |||||||||||  ||||  |||  |           |  | |  |   | | | | |       | |      | |  ||   ||  || | |      ||  |||  || 
GAAGTCGAAGGGGATCGAAGCGTTGTTTCCCATTCAGGCTATGACGTTCGATACCATTCTTGATGGGTCTGATTTGGTTGGCCGGGCGCGTACTGGTCAGgtacgtatgattt--tggtgtctgttttgttgctgagaaaatatgggtaaaaaggagttgagttttgggttttcaattttctttacaaacaatataagatca