Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCATTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtctttccattaaaccctaatttcccaatccccttttcctccttcttccacaacacacttcgcttcaatctctgtggtgggttagatcatcgtttt...

Basic information

species Glycine max
transcript GLYMA10G37870.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198779|gb|HO042142.1|HO042142
EST:     ACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: ACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|254314114|gb|GR831743.1|GR831743
EST:     CAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: CAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|298192396|gb|HO036478.1|HO036478
EST:     GAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCAGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: GAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|207696521|gb|GD678642.1|GD678642
EST:     TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|208084146|gb|GD881422.1|GD881422
EST:     TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|298174707|gb|HO014738.1|HO014738
EST:     TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGTACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|298186354|gb|HO036987.1|HO036987
EST:     ACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTCTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC
genomic: ACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... atgtatgcagGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCTCATTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtctttccattaaaccctaatttcccaatccccttttcctccttcttccacaacacacttcgcttcaatctctgtggtgggttagatcatcgtttt

- - - - - - - - - - AAGCAA
- - - - - - - - - - - GCAAAG