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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATCAGCTTCTTCAAAAACCCTAATTGCTATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatggcttcttctgttccttgcttgctttaatgctaaattgcaaatcattgttcaacgttaactagttattgcataaaccataaacgaaacgtttctgaagcgtgtttgtttctgggacag

Basic information

species Glycine max
transcript GLYMA10G37840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533486|gb|EH261619.1|EH261619
EST:     CTCTTTCACAGCACACTCCTCCCAGGGNTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTCTTTCACAGCACACTCCTCCCAGGG-TTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|213618406|gb|DB961579.1|DB961579
EST:     TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|17021112|gb|BM092146.1|BM092146
EST:     ACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: ACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|120494562|gb|EH222729.1|EH222729
EST:     CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|4287211|gb|AI441157.1|AI441157
EST:     GCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: GCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|42722526|gb|CK768425.1|CK768425
EST:     AGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: AGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|15663379|gb|BI700750.1|BI700750
EST:     TCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|21601409|gb|BQ611740.1|BQ611740
EST:     CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|58022088|gb|CX708829.1|CX708829
EST:     TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|151396437|gb|EV266314.1|EV266314
EST:     ACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGGCTGAACAA
genomic: ACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|16342062|gb|BI967657.1|BI967657
EST:     TTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|151412115|gb|EV281927.1|EV281927
EST:     TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|7232950|gb|AW568301.1|AW568301
EST:     TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|7232862|gb|AW568214.1|AW568214
EST:     TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|31474246|gb|CD416274.1|CD416274
EST:     CTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCTTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|120531718|gb|EH259851.1|EH259851
EST:     CTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|21889217|gb|BQ742430.1|BQ742430
EST:     GGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: GGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|254341148|gb|GR854876.1|GR854876
EST:     CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|24136180|gb|BU926690.1|BU926690
EST:     TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|31456593|gb|CD398621.1|CD398621
EST:     CTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGTACAA
genomic: CTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|58014661|gb|CX701403.1|CX701403
EST:     TCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: TCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: gi|31311388|gb|CD396591.1|CD396591
EST:     CAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG                         GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTATCAGCTTCTTCAAAAACCCTAATTGCTATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatggcttcttctgttccttgcttgctttaatgctaaattgcaaatcattgttcaacgttaactagttattgcataaaccataaacgaaacgtttctgaagcgtgtttgtttctgggacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC