1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTCTTTGGCGCTGTCGCCGTTCTTAGCCCTAGTCTCTCTGTCTCTCGTCGCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttttttttttaccattttccccccgttttttcaatgtctccttgcttcgctgaatcgcttcttctgcttcttcttcttcttccgttttttttt...
species | Glycine max |
transcript | GLYMA10G37720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAAACATTTTACTG TGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|193481063|gb|FK444782.1|FK444782
genomic: AAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: CCACCAAGGAAAACATTTTACTG TGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|151404340|gb|EV274150.1|EV274150
genomic: CCACCAAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTG TGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|57574334|gb|CX547309.1|CX547309
genomic: GCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTG TTAAGAACAATGAGGAAGCCTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|192295691|gb|FG990545.1|FG990545
genomic: GTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTG TGAAGAACGATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|58014941|gb|CX701683.1|CX701683
genomic: GCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: CAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTG TTAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: CAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttt ... tgaatgacagTGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTTGGCGCTGTCGCCGTTCTTAGCCCTAGTCTCTCTGTCTCTCGTCGCCTCTCTGCAAGTTAGCTGGGACAAGCCACCAAGGAAAACATTTTACTGgtattttttttttttttaccattttccccccgttttttcaatgtctccttgcttcgctgaatcgcttcttctgcttcttcttcttcttccgttttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc