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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaacaatcaatgtctcgtggggattttgacttccatgtttgttgagctcattatagtcatttgcag

Basic information

species Glycine max
transcript GLYMA10G37690.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401377|gb|EV271191.1|EV271191
EST:     TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG                         ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: gi|192321001|gb|FK013503.1|FK013503
EST:     TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG                         ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: gi|13482016|gb|BG511359.1|BG511359
EST:     TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG                         ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: gi|151404534|gb|EV274348.1|EV274348
EST:     TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG                         ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaacaatcaatgtctcgtggggattttgacttccatgtttgttgagctcattatagtcatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG