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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGGTTCACTTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGgtatattaattcacactgattttagttttatttagtttggtctatgtttgtgctattttttttttttgcatctgaatattgagtttgtgttggcatag

Basic information

species Glycine max
transcript GLYMA10G37560.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37560.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G25700.1 (Arabidopsis thaliana), 5'ss of exon 1
CCAGAGGTTCACTTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGgtatattaattcacactgattttagttttatttagtttggtctatgtttgtgctattttttttttttgcatctgaatattgagtttgtgttggcatag
  |||||| |||||||||  | || ||| |  |||| |||||||| ||||| |||||||| ||  | || ||||| || |||||||| |||||||||||||||||   |   | ||| | |  |  |  |   | |      | ||  |   |   |  |||| ||||  |   || ||                   
GGAGAGGTCCACTTATCTAATCGCTGCTATGTTGTCGAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGgtataactaacta-actaact--aactaaaccaattcgaaattctgaattctcacatccttttgtttggttgcaaaaatcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349239|gb|BI974834.1|BI974834
EST:     CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACA
genomic: CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACA
EST: gi|192307275|gb|FK002367.1|FK002367
EST:     CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|18733872|gb|BM527861.1|BM527861
EST:     CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC