Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCACACTATATTAGAGTTTCAGATCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctcccattattttattgcacctctcccttcacaacgttgattgaacaataaaaggattctattttgaggaacccttaatcgataactgatttctttttttgtgtgtgttgcag

Basic information

species Glycine max
transcript GLYMA10G36880.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172960|gb|HO019944.1|HO019944
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|7640426|gb|AW734728.1|AW734728
EST:     AACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: AACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298181489|gb|HO022928.1|HO022928
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|192324486|gb|FK016767.1|FK016767
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|14125249|gb|BG789687.1|BG789687
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|14258630|gb|BG881538.1|BG881538
EST:     GGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: GGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298186675|gb|HO037308.1|HO037308
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAGCACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAG
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAG
EST: gi|9204988|gb|BE331212.1|BE331212
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|17963641|gb|BM270388.1|BM270388
EST:     CCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: CCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298173840|gb|HO017176.1|HO017176
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACCTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|21887134|gb|BQ740347.1|BQ740347
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|14990641|gb|BI316314.1|BI316314
EST:     CGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: CGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|9564231|gb|BE473740.1|BE473740
EST:     GGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: GGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298177307|gb|HO027088.1|HO027088
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAGCGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|7042042|gb|AW471936.1|AW471936
EST:     GCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: GCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298175365|gb|HO016024.1|HO016024
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298197918|gb|HO039457.1|HO039457
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298183861|gb|HO029074.1|HO029074
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|23733952|gb|BU765192.1|BU765192
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|19935035|gb|BQ080065.1|BQ080065
EST:     ATCGACGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298188760|gb|HO035453.1|HO035453
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|10710703|gb|BF010421.1|BF010421
EST:     CCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: CCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|207827202|gb|GD798311.1|GD798311
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|192328687|gb|FK023173.1|FK023173
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|151401834|gb|EV271647.1|EV271647
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298192674|gb|HO033108.1|HO033108
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|298185842|gb|HO031003.1|HO031003
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|48575205|gb|CO036287.1|CO036287
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|208267691|gb|GE066796.1|GE066796
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|193395262|gb|FK358679.1|FK358679
EST:     CGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: CGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|21602043|gb|BQ612374.1|BQ612374
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
EST: gi|48575743|gb|CO036554.1|CO036554
EST:     ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATG                         TCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC
genomic: ATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGgtgcgctccc ... tgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACC