1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccatcttcactctctctagcaattgctcatgctccttttctcttcttcgtttgcatttcgagattcgtaggaaaaatgatgttgttgacgatgc...
species | Glycine max |
transcript | GLYMA10G36780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|14259532|gb|BG882440.1|BG882440
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: CTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209699676|gb|BW655742.1|BW655742
genomic: CTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTC-GGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|7042244|gb|AW472138.1|AW472138
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209717595|gb|BW671491.1|BW671491
genomic: GGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|120532147|gb|EH260280.1|EH260280
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: AGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAANGCACGGTTCACTEST: gi|9564117|gb|BE473626.1|BE473626
genomic: AGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: TGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|16347833|gb|BI973428.1|BI973428
genomic: TGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: CGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209729583|gb|BW655159.1|BW655159
genomic: CGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213595132|gb|DB972066.1|DB972066
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209700389|gb|BW660833.1|BW660833
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209711914|gb|BW678993.1|BW678993
genomic: GACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213601307|gb|DB956559.1|DB956559
genomic: GCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213603059|gb|DB960392.1|DB960392
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209705363|gb|BW668007.1|BW668007
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209706622|gb|BW676143.1|BW676143
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: CTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213592538|gb|DB961798.1|DB961798
genomic: CTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213616738|gb|DB971249.1|DB971249
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209716133|gb|BW668659.1|BW668659
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|7684769|gb|AW755417.1|AW755417
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: TAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|17963955|gb|BM270698.1|BM270698
genomic: TAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209699780|gb|BW655793.1|BW655793
genomic: GTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGGCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209718048|gb|BW671881.1|BW671881
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGGCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|213596684|gb|DB956048.1|DB956048
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTEST: gi|209709118|gb|BW658834.1|BW658834
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccatcttcactctctctagcaattgctcatgctccttttctcttcttcgtttgcatttcgagattcgtaggaaaaatgatgttgttgacgatgc
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaat