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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattaactttccaatttttcactgatatctgttcttgggttacattgtgtttttggaattatggaatttgatatatagagggaggaagagagataaa...

Basic information

species Glycine max
transcript GLYMA10G36620.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattaactttccaatttttcactgatatctg-------ttcttgggttacat-tgtgtttttggaattatggaatttgatatatagagggaggaagagagataaa---------------------------------------------
||| || | || || |  |||||| |||||||||| ||||| ||||||||  | ||||| || |||||||  || ||||| ||| ||||||| |||||||||||   | | | || | | |||| |  || |||       | | ||  | ||    |  || ||     | |  || |  |    ||  | |  ||| | |   |                                               
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaag--agcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaa-attcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattaacttt-ccaatttttcactgatatctgttcttgggttacattgtgtttttggaattatggaatttgatatatagagggaggaagagagataaa
|||||| | || || ||||| ||| ||||||||||||| |||||||||||  | |||||||| || |||||||| ||||| ||||||||||| || |||||||  |   |||   |||    | | | | |    |   |   | | ||| | | | |   ||| |  | ||  ||  |                      
GCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGgtacttcttcttcatcaaaaccttatttacaatcatatct---tcaaattatttgtctaatattttcaatttcaatgcag---------------------

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaat-taactttccaatttttcactgatatctgttcttgggttacattg--tgtttttggaattatggaatttgatatatagagggaggaagagagataaa
||| | || || || ||||| ||| |||||||||| ||||||||||||||  | |||||||| || |||||||| ||||| |||||||| |  || |||||||||  |  || |     | ||   | | |  | ||||| |    |  |   | || ||  ||||     | ||   || | |  |                
GCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGgtaaagatttctcttttgctcttacttaagacgttttctttgaaacctgtagctattcttctaatttgtttacttatcatgttgcag----------------

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 1
GCAACAGTGGACGCAGCTGCATGGGTGTTCAATGTTGTCACTTCTGTTGGAGTTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattaactttccaatttttcactgatatctgttcttgggttacattgtgtttttggaattatggaatttgatatatagagggaggaagagagataaa-------
||| || | || ||||| |||||| |||||||||||||||||||||||||  ||||| |||| |||||||| || ||||| || ||||| |||||||||||||| |   |||| | |   |  | |    | | ||||| | |||  || | ||    |  |      ||||  || ||  | |   | | |    | |        
GCAGCACTAGATGCAGCCGCATGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCCTTGTCAACAAAGCATTAATGGCTACATATGGATTCAGTTTTGgtaatt---cttttctaaagtaaatttgcgttttttctttgattaatttcttttgcctgtgt----atattttttacatgcatgtgtggataattctcacttcttaa