1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGACGACGAGGACACCGGAGCTCACGTCGCTCCAATCGTCAAGCTCGAGGAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctctttctttctctcgtttttctccttttttgcttcccgattttactgttttgccactgattggtgcggttgatgcttgttttctcgctgatcgcag
species | Glycine max |
transcript | GLYMA10G36500.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGATTATTATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|213598628|gb|DB964250.1|DB964250
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|26045879|gb|CA783312.1|CA783312
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|9985899|gb|BE659905.1|BE659905
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|18040952|gb|BM309246.1|BM309246
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|7042320|gb|AW472214.1|AW472214
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|254322064|gb|GR837478.1|GR837478
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|9985900|gb|BE659906.1|BE659906
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|6567189|gb|AW234804.1|AW234804
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|9565033|gb|BE474542.1|BE474542
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|24205315|gb|BU964568.1|BU964568
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCGEST: gi|192330808|gb|FK021595.1|FK021595
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctct ... ctgatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGACGGGAACCAGTGGAAGGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACGACGAGGACACCGGAGCTCACGTCGCTCCAATCGTCAAGCTCGAGGAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTGGATCTgtaacgctctttctttctctcgtttttctccttttttgcttcccgattttactgttttgccactgattggtgcggttgatgcttgttttctcgctgatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG