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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttatagttagttaggtctctccatgaacatttataaagttaaatgaaccaaaccttttttattaagttaaaattaacgtatgcaccttagcatt...

Basic information

species Glycine max
transcript GLYMA10G35960.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208221961|gb|GE020343.1|GE020343
EST:     CTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG                         GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
genomic: CTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
EST: gi|208067103|gb|GD862195.1|GD862195
EST:     CTTGCCAAGGAGTTGAAG                         GTGGAGTTGGGGAGGTATTGTGGGGACTGGACCGATGGGGAGGATTGTGGC
genomic: CTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGG-ATTGTGGGGACTGGACCGATGGGGAGGATTGTGGC
EST: gi|207794640|gb|GD766281.1|GD766281
EST:     AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG                         GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
genomic: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
EST: gi|208113567|gb|GD913390.1|GD913390
EST:     AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG                         GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
genomic: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttatagttagttaggtctctccatgaacatttataaagttaaatgaaccaaaccttttttattaagttaaaattaacgtatgcaccttagcatt

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcca