1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttatagttagttaggtctctccatgaacatttataaagttaaatgaaccaaaccttttttattaagttaaaattaacgtatgcaccttagcatt...
species | Glycine max |
transcript | GLYMA10G35960.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTEST: gi|208067103|gb|GD862195.1|GD862195
genomic: CTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
EST: CTTGCCAAGGAGTTGAAG GTGGAGTTGGGGAGGTATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCEST: gi|207794640|gb|GD766281.1|GD766281
genomic: CTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGG-ATTGTGGGGACTGGACCGATGGGGAGGATTGTGGC
EST: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTEST: gi|208113567|gb|GD913390.1|GD913390
genomic: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
EST: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAG GTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
genomic: AGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttat ... ttcccaacagGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGgtagttttatagttagttaggtctctccatgaacatttataaagttaaatgaaccaaaccttttttattaagttaaaattaacgtatgcaccttagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG